• BioPAX (Biological Pathway Exchange) is a RDF/OWL-based standard language to represent biological pathways at the molecular and cellular level. Its major...
    5 KB (510 words) - 08:31, 17 August 2023
  • Thumbnail for Systems Biology Ontology
    allows SBO terms to be added to Biological Pathway Exchange (BioPAX). This links BioPAX to information useful for modelling, especially by adding quantitative...
    9 KB (1,035 words) - 13:09, 28 December 2023
  • standard formats including PDF, SBML, Neo4j GraphDB, MySQL, PSI-MITAB, and BioPAX. Pathway diagrams use a Process Description (PD) Systems Biology Graphical...
    15 KB (1,727 words) - 04:45, 9 July 2024
  • Ontology, a formal upper ontology designed to support scientific research BioPAX, an ontology for the exchange and interoperability of biological pathway...
    60 KB (6,188 words) - 01:26, 29 September 2024
  • VCML Archived 2006-12-09 at the Wayback Machine, XPP, SciLab, Octave, BioPAX and RDF/XML. The reaction networks of models are presented in some graphic...
    7 KB (646 words) - 12:46, 31 July 2024
  • be downloaded as XML (including the standard pathway interchange format, BioPAX). The entire database is also available for download. Reactome KEGG Human...
    4 KB (334 words) - 15:05, 19 January 2024
  • networks. ConsensusPathDB currently allows users to export their models in BioPAX format or as image in several formats. Users can search for shortest paths...
    4 KB (377 words) - 18:07, 8 December 2023
  • affect human health. Pathway commons is a project and database that uses BioPAX language to convert, integrate and query other biological pathway and interaction...
    3 KB (450 words) - 23:20, 26 April 2022
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    License, Version 2.0. In addition to various primary data formats (e.g. GPML, BioPAX, Reactome, KEGG, and RDF), WikiPathways supports a variety of ways to integrate...
    10 KB (1,106 words) - 10:23, 11 August 2024
  • (SBML) Biological pathways can be imported as Biological Pathway Exchange (BioPAX) to build and annotate models. VCell allows users integrated access to a...
    11 KB (1,190 words) - 22:08, 15 September 2024
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    pathway datasets. All 45 pathways are freely downloadable in BioPAX, PSI-MI and SBML formats. BioPAX is an emerging standard for pathway data exchange. The...
    9 KB (755 words) - 17:53, 20 July 2024
  • Cytoscape Network analysis and visualization software .sif, .nnf, .gml, SBML, BioPAX, GraphML, Delimited text, .xls,. xlsx, Cytoscape.js JSON, Cytoscape CX CX...
    20 KB (1,324 words) - 18:41, 28 July 2024
  • 13, 2010. Parish, Jeremy (March 11, 2011). "Postcard from PAX: The Iterative Evolution of BioShock Infinite". 1UP.com. Archived from the original on June...
    177 KB (14,264 words) - 04:40, 30 September 2024
  • applications. Reactome data available in a variety of standard formats, including BioPAX, SBML and PSI-MI, and also enable data exchange with other pathway databases...
    99 KB (11,432 words) - 18:01, 29 April 2024
  • research. Systems Biology Markup Language (SBML) Biological Pathway Exchange (BioPAX) CellML Minimum Information About a Simulation Experiment (MIASE) Minimum...
    2 KB (130 words) - 00:01, 25 September 2024
  • Thumbnail for BioWare
    BioWare is a Canadian video game developer based in Edmonton, Alberta. It was founded in 1995 by newly graduated medical doctors Ray Muzyka, Greg Zeschuk...
    66 KB (5,680 words) - 22:32, 17 September 2024
  • encoded in SBML can be retrieved from BioModels. Other markup languages with different emphases include BioPAX and CellML. Creating a cellular model has...
    21 KB (2,118 words) - 13:57, 31 October 2023
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    abbreviation". CellML homepage IUPS Physiome Project Physiome JAPAN Project Interactive cell models Java versions of many of CellML cardiac models. SBML BioPAX...
    8 KB (1,089 words) - 20:50, 28 November 2023
  • Thumbnail for Metabolic network modelling
    allow simulations on those. KEGGtranslator converts these files to SBML, BioPAX, SIF, SBGN, SBML with qualitative modeling extension, GML, GraphML, JPG...
    48 KB (5,355 words) - 12:38, 9 January 2024
  • Biology Markup Language (SBML) Systems Biology Graphical Notation (SBGN - ML) BioPAX Version 6 uses UniProt sequences as training sequences. There are 19132...
    21 KB (2,612 words) - 20:49, 10 March 2024
  • Thumbnail for COMBINE
    biology. The major representation formats covered by COMBINE activity are the BioPAX standards language, SBGN, SBML and the SED-ML and CellML markup languages...
    3 KB (283 words) - 20:46, 1 March 2018
  • Pages are freely available to the public. Data can be exported to PDF, XML, BioPAX/SBPAX and SBML. MIRIAM Registry Details. Robitaille, Aaron; Hall, Michael...
    3 KB (325 words) - 15:58, 13 April 2024
  • Thumbnail for Flux balance analysis
    COBRApy, CarveMe, MIOM, or COBREXA.jl. Generally models are created in BioPAX or SBML format so that further analysis or visualization can take place...
    45 KB (5,868 words) - 13:39, 3 December 2023
  • contained within each pathway diagram is available for download in TSV, BioPAX and GPML formats. PharmGKB provides PGx-based drug dosing guidelines from...
    16 KB (1,762 words) - 01:29, 22 November 2022
  • community. SBML is an official IETF MIME type, specified by RFC 3823. BioModels Database BioPAX CellML MIASE MIRIAM Systems Biology Ontology Systems Biology Graphical...
    37 KB (4,323 words) - 21:06, 30 December 2023
  • Optimus Prime (redirect from Orion Pax)
    Kaye, Alan Tudyk and Chris Hemsworth. Optimus Prime, also known as Orion Pax, embodies strong moral values, exceptional leadership, and strategic prowess...
    31 KB (3,018 words) - 12:02, 30 September 2024
  • Thumbnail for Minimum information about a simulation experiment
    simulation tools. In April 2009, MIASE was part of the "CellML, SBGN, SBO, BioPAX, and MIASE Super-Workshop 2009". The MIASE Guidelines are composed of the...
    5 KB (685 words) - 02:40, 3 December 2023
  • Thumbnail for SABIO-Reaction Kinetics Database
    access Result data sets can be exported in different formats including SBML, BioPAX/SBPAX, and table format. Wittig, U; Rey, M; Weidemann, A; Kania, R; Müller...
    9 KB (769 words) - 01:09, 18 June 2024
  • Emergent BioSolutions Inc. is an American multinational specialty biopharmaceutical company headquartered in Gaithersburg, Maryland. It develops vaccines...
    66 KB (6,852 words) - 21:21, 28 July 2024
  • Thumbnail for Sue Thomas: F.B.Eye
    Sue Thomas: F.B.Eye (category PAX TV original programming)
    television series that premiered in 2002 on the PAX Network. The show ended in May 2005 due to PAX's decision to halt the production of original programming...
    30 KB (3,212 words) - 14:24, 21 August 2024