• The BurrowsWheeler transform (BWT, also called block-sorting compression) rearranges a character string into runs of similar characters. This is useful...
    39 KB (3,525 words) - 08:55, 23 September 2024
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    inverse BurrowsWheeler transform can be considered to generate a set of Lyndon words. It can be shown that if we perform the inverse BurrowsWheeler transform...
    32 KB (3,515 words) - 19:08, 29 October 2024
  • MTF transform may actually increase the entropy. An important use of the MTF transform is in BurrowsWheeler transform based compression. The Burrows–Wheeler...
    13 KB (1,603 words) - 08:01, 9 August 2024
  • Michael Burrows, FRS (born 1963) is a British computer scientist and the creator of the BurrowsWheeler transform, currently working for Google. Born...
    10 KB (715 words) - 00:03, 27 January 2024
  • Thumbnail for David Wheeler (computer scientist)
    Wheeler's contributions to the field included work on the Electronic Delay Storage Automatic Calculator (EDSAC) in the 1950s and the BurrowsWheeler transform...
    15 KB (1,419 words) - 07:14, 13 September 2024
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    techniques, such as run-length encoding (RLE), BurrowsWheeler transform (BWT), move-to-front transform (MTF), and Huffman coding. bzip2 compresses data...
    21 KB (2,818 words) - 22:23, 25 October 2024
  • Durbin, R. (2009). "Fast and accurate short read alignment with BurrowsWheeler transform". Bioinformatics. 25 (14): 1754–1760. doi:10.1093/bioinformatics/btp324...
    69 KB (2,358 words) - 02:53, 19 August 2024
  • BWT may refer to the BurrowsWheeler transform, an algorithm used in file compression BWT, an Austrian wastewater company Bridgwater railway station,...
    379 bytes (72 words) - 01:24, 23 March 2022
  • transform BurrowsWheeler transform (data compression) Chirplet transform Distance transform Fractal transform Gelfand transform Hadamard transform Hough...
    3 KB (267 words) - 10:01, 30 April 2024
  • FM-index is a compressed full-text substring index based on the BurrowsWheeler transform, with some similarities to the suffix array. It was created by...
    10 KB (1,076 words) - 14:36, 14 March 2024
  • matching on a 900 MB dictionary window, followed by bzip2-based BurrowsWheeler transform and entropy coding (Huffman) on 900 kB output chunks. rzip operates...
    10 KB (1,266 words) - 21:54, 6 October 2023
  • and less expansion of incompressible data. Bzip2 – The standard BurrowsWheeler transform algorithm. Bzip2 uses two reversible transformations; BWT, then...
    11 KB (1,244 words) - 07:02, 3 November 2024
  • The speed increase of Bowtie is partly due to implementing the BurrowsWheeler transform for aligning, which reduces the memory footprint (typically to...
    8 KB (640 words) - 03:09, 3 December 2023
  • typically operates with a 32768-byte window, whereas bzip2 uses a BurrowsWheeler transform roughly 27 times bigger. xz defaults to 8 MiB but supports significantly...
    4 KB (567 words) - 04:55, 19 September 2024
  • Li's papers on SAMtools and BWA (sequence alignment using the BurrowsWheeler transform) have both been cited over 16,000 times. In 2012, Li won the Benjamin...
    17 KB (727 words) - 13:28, 28 May 2024
  • Look-and-say sequence Comparison of graphics file formats Golomb coding BurrowsWheeler transform Recursive indexing Run-length limited Bitmap index Forsyth–Edwards...
    11 KB (1,339 words) - 09:08, 30 October 2024
  • Thitimajshima introduce Turbo codes 1994 – Michael Burrows and David Wheeler publish the BurrowsWheeler transform, later to find use in bzip2 1995 – Benjamin...
    9 KB (893 words) - 22:51, 25 April 2024
  • probabilistic models, such as prediction by partial matching. The BurrowsWheeler transform can also be viewed as an indirect form of statistical modelling...
    68 KB (7,525 words) - 11:05, 1 November 2024
  • improving global context and compressibility following a BurrowsWheeler transform. Following this transform, files tend to have large regions with locally high...
    8 KB (1,286 words) - 06:49, 19 August 2024
  • algorithm developed by Peter Shor 1994 – BurrowsWheeler transform developed by Michael Burrows and David Wheeler 1994 – Bootstrap aggregating (bagging)...
    20 KB (2,097 words) - 16:40, 18 September 2024
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    by Descent Detection in Biobank-Scale Cohorts using Positional BurrowsWheeler Transform Parente: identifies IBD segments between pairs of individuals...
    28 KB (2,700 words) - 12:46, 27 September 2024
  • and Zstandard Arithmetic coding – Entropy encoding BurrowsWheeler transform reversible transform for making textual data more compressible, used by bzip2...
    34 KB (4,200 words) - 23:19, 19 October 2024
  • compression format. The compression algorithm is a BurrowsWheeler transform followed by a move-to-front transform and finally Huffman coding. .F, .?XF Freeze/melt...
    48 KB (1,132 words) - 00:19, 18 September 2024
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    find repeated data, and can be used for the sorting stage of the BurrowsWheeler transform. Variants of the LZW compression schemes use suffix trees (LZSS)...
    29 KB (3,707 words) - 16:52, 11 October 2024
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    command-line utility producing a permuted index Concordancer BurrowsWheeler transform Suffix tree Manning, C. D.; Schütze, H. (1999). Foundations of...
    6 KB (595 words) - 11:15, 12 August 2024
  • such tool, followed by Orcom and Mince. BEETL uses a generalized BurrowsWheeler transform for reordering reads, and HARC achieves better performance with...
    31 KB (3,686 words) - 19:03, 23 July 2024
  • created ELIZA David Wheeler – cocreated subroutine; designed WAKE; co-designed Tiny Encryption Algorithm, XTEA, BurrowsWheeler transform Molly White – HubSpot;...
    44 KB (3,747 words) - 16:10, 22 September 2024
  • factorizations may be used as part of a bijective variant of the BurrowsWheeler transform for data compression, and in algorithms for digital geometry....
    21 KB (2,749 words) - 01:18, 7 August 2024
  • the Bowtie sequence alignment algorithm, which implements the BurrowsWheeler transform in order to improve the scalability of sequence alignment. As...
    4 KB (228 words) - 18:17, 3 December 2023
  • method bucket sort bucket trie buddy system buddy tree build-heap BurrowsWheeler transform (BWT) busy beaver Byzantine generals cactus stack Calculus of...
    35 KB (3,137 words) - 09:36, 21 October 2024