COPASI (COmplex PAthway SImulator) is an open-source software application for creating and solving mathematical models of biological processes such as...
5 KB (390 words) - 00:37, 3 April 2024
equation}}+{\text{particular solution}}} Maxima, an open-source computer algebra system. COPASI, a free (Artistic License 2.0) software package for the integration and...
44 KB (4,890 words) - 01:31, 3 October 2024
Kummer, Ursula; Mendes, Pedro; Pahle, Jürgen; Sahle, Sven (November 2017). "COPASI and its applications in biotechnology". Journal of Biotechnology. 261: 215–220...
44 KB (3,383 words) - 17:51, 9 February 2024
PrecisePK Simulation All model based software above. Freeware: Pumas, COPASI, Berkeley Madonna, MEGen. Global centres with the highest profiles for providing...
46 KB (4,510 words) - 13:42, 23 September 2024
reaction. Software packages that include numerical integrators, such as COPASI or SBMLsimulator, are then able to simulate the system dynamics given an...
48 KB (5,355 words) - 12:38, 9 January 2024
perceive images BASIL, vibratory system for deaf people to perceive sounds COPASI, software application for creating and solving mathematical models of biological...
7 KB (900 words) - 16:12, 15 August 2024
University of Lisbon (Lic) Aberystwyth University (PhD) Known for GEPASI COPASI Systems Biology Markup Language (SBML) MIRIAM Scientific career Fields Systems...
5 KB (305 words) - 06:11, 27 July 2024
Simcyp Simulator ADME Workbench General software: ADAPT 5 Berkeley Madonna COPASI: Biochemical System Simulator Ecolego Free simulation software: GNU MCSIM...
26 KB (3,144 words) - 16:03, 25 May 2024
virtual patient (Entelos). A few of these software tools are listed below: COPASI [4] runBiosimulations [5] Tellurium [6] Metabolism PhysioLab (Entelos)[7]...
6 KB (655 words) - 01:32, 1 August 2023
for studying biochemical networks using experimental data . It developed COPASI (Complex Pathway Simulator), an open-source software package that allows...
12 KB (1,365 words) - 13:30, 19 March 2024
Kummer, U. (2009). "Computational Modeling of Biochemical Networks Using COPASI". Systems Biology. Methods in Molecular Biology. Vol. 500. pp. 17–59. doi:10...
17 KB (1,852 words) - 00:58, 3 September 2023
for small molecule identification from tandem mass spectrometry data), COPASI (open source software application for creating and solving mathematical...
25 KB (2,500 words) - 05:01, 10 September 2024
code. This feature was a result of a collaboration with the team behind COPASI. In April, 2015, Peccoud and colleagues published a library of biological...
13 KB (1,325 words) - 05:33, 3 December 2023
fit experimental data can be estimated using algorithms developed by the COPASI software system. These tools are available in VCell. Models and simulation...
11 KB (1,190 words) - 22:08, 15 September 2024
used by several worldwide projects such as BioModels Database, SABIO-RK, COPASI, A more thorough listing can be found on the website. Minimum information...
7 KB (806 words) - 17:02, 3 December 2023
coding. Other useful applications and learning environments are: Gepasi, Copasi, BioUML, Simbiology (MATLAB) and Bio-SPICE. The first conference in Synthetic...
31 KB (3,351 words) - 04:26, 22 June 2024
tools that can directly compute elasticities and control coefficients: COPASI (GUI) PySCeS (Python) SBW (GUI) libroadrunner (Python) VCell Classical Control...
28 KB (4,499 words) - 21:30, 14 June 2024
S, Sahle S, Gauges R, Lee C, Pahle J, Simus N, et al. (December 2006). "COPASI--a COmplex PAthway SImulator". Bioinformatics. 22 (24): 3067–74. doi:10...
56 KB (6,761 words) - 08:37, 24 May 2024