SEQ or seq may refer to: Sequence (disambiguation), a word commonly abbreviated as "seq." South East Queensland, a place in Australia Seq, Iran, a village...
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RNA-Seq (named as an abbreviation of RNA sequencing) is a technique that uses next-generation sequencing to reveal the presence and quantity of RNA molecules...
103 KB (11,098 words) - 04:11, 29 July 2024
method for MNase-seq, FAIRE-Seq and DNase-Seq. ATAC-seq is a faster analysis of the epigenome than DNase-seq or MNase-seq. ATAC-seq identifies accessible...
16 KB (1,726 words) - 17:22, 15 July 2024
Perturb-seq (also known as CRISP-seq and CROP-seq) refers to a high-throughput method of performing single cell RNA sequencing (scRNA-seq) on pooled genetic...
21 KB (2,588 words) - 18:53, 19 April 2024
snRNA-seq, also known as single nucleus RNA sequencing, single nuclei RNA sequencing or sNuc-seq, is an RNA sequencing method for profiling gene expression...
14 KB (1,757 words) - 16:31, 27 September 2023
MNase-seq, short for micrococcal nuclease digestion with deep sequencing, is a molecular biological technique that was first pioneered in 2006 to measure...
39 KB (4,420 words) - 19:10, 15 May 2024
FAIRE-Seq (Formaldehyde-Assisted Isolation of Regulatory Elements) is a method in molecular biology used for determining the sequences of DNA regions...
13 KB (1,541 words) - 22:28, 2 December 2023
The Reference Sequence (RefSeq) database is an open access, annotated and curated collection of publicly available nucleotide sequences (DNA, RNA) and...
14 KB (1,188 words) - 02:16, 14 August 2024
DNase-seq (DNase I hypersensitive sites sequencing) is a method in molecular biology used to identify the location of regulatory regions, based on the...
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Bulk RNA barcoding and sequencing (BRB-seq) is an ultra-high-throughput bulk 3' mRNA-seq technology that uses early-stage sample barcoding and unique...
15 KB (1,757 words) - 22:15, 17 July 2024
DRIP-seq (DRIP-sequencing) is a technology for genome-wide profiling of a type of DNA-RNA hybrid called an "R-loop". DRIP-seq utilizes a sequence-independent...
16 KB (1,997 words) - 09:10, 5 August 2024
ChIP sequencing (redirect from Chip-Seq)
ChIP-sequencing, also known as ChIP-seq, is a method used to analyze protein interactions with DNA. ChIP-seq combines chromatin immunoprecipitation (ChIP)...
27 KB (3,353 words) - 03:17, 31 July 2024
CITE-Seq (Cellular Indexing of Transcriptomes and Epitopes by Sequencing) is a method for performing RNA sequencing along with gaining quantitative and...
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CUT&RUN sequencing (redirect from CUT&RUN-seq)
alternative to the current standard of ChIP-seq. ChIP-Seq suffers from limitations due to the cross linking step in ChIP-Seq protocols that can promote epitope...
16 KB (2,049 words) - 03:28, 3 December 2023
On Unix-like computer systems, seq is a utility for generating a sequence of numbers. seq first appeared on 8th edition Research Unix in 1985, and was...
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ClickSeq is a click-chemistry based method for generating next generation sequencing libraries for deep-sequencing platforms including Illumina, HiSeq, MiSeq...
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CAPP-Seq (cancer personalized profiling by deep sequencing) is a next-generation sequencing based method used to quantify circulating DNA in cancer (ctDNA)...
22 KB (2,811 words) - 13:32, 14 October 2024
TCR-Seq (T-cell Receptor Sequencing) is a method used to identify and track specific T cells and their clones. TCR-Seq utilizes the unique nature of a...
22 KB (2,554 words) - 14:34, 22 July 2024
STARR-seq (short for self-transcribing active regulatory region sequencing) is a method to assay enhancer activity for millions of candidates from arbitrary...
13 KB (1,616 words) - 01:27, 3 December 2023
Nucleosome Occupancy and Methylome Sequencing (NOMe-seq) is a genomics technique used to simultaneously detect nucleosome positioning and DNA methylation...
17 KB (2,009 words) - 10:32, 7 March 2024
3' mRNA-seq is a quantitative, genome-wide transcriptomic technique based on the barcoding of the 3' untranslated region (UTR) of mRNA molecules. Unlike...
11 KB (1,324 words) - 04:03, 22 July 2024
RNA-Seq is a technique that allows transcriptome studies (see also Transcriptomics technologies) based on next-generation sequencing technologies. This...
164 KB (20,376 words) - 21:20, 25 September 2024
Restriction site associated DNA markers (redirect from DdRAD-seq)
Although genotyping by sequencing presents an approach similar to the RAD-seq method, they differ in some substantial ways. The use of the flanking DNA...
13 KB (1,424 words) - 22:05, 2 December 2023
Deterministic Barcoding in Tissue for Spatial Omics Sequencing (redirect from Deterministic Barcoding in Tissue for Spatial Omics Sequencing (DBiT-seq))
Deterministic Barcoding in Tissue for Spatial Omics Sequencing (DBiT-seq) was developed at Yale University by Rong Fan and colleagues in 2020 to create...
13 KB (1,637 words) - 10:25, 8 January 2024
South East Queensland (redirect from South East Queensland (SEQ))
South East Queensland (SEQ) is a bio-geographical, metropolitan, political and administrative region of the state of Queensland in Australia, with a population...
33 KB (2,825 words) - 02:17, 6 October 2024
assay. MOWChIP-seq is a special type of ChIP-seq assay designed for low-input and high-throughput assays. The overall process of MOWChIP-seq is similar to...
4 KB (436 words) - 04:24, 23 September 2022
Phage immunoprecipitation sequencing (PhIP-Seq) is method that combines barcoded DNA high-throughput sequencing and proteomics to determine the levels...
1 KB (117 words) - 15:05, 18 April 2023
Transcriptomics technologies (section RNA-Seq)
field: microarrays, which quantify a set of predetermined sequences, and RNA-Seq, which uses high-throughput sequencing to record all transcripts. As the...
120 KB (12,516 words) - 05:37, 20 May 2024
Single-cell genome and epigenome by transposases sequencing (scGET-seq) is a DNA sequencing method for profiling open and closed chromatin. In contrast...
20 KB (2,214 words) - 11:43, 13 February 2024