The Sequence Ontology (SO) is an ontology suitable for describing biological sequences. It is designed to make the naming of DNA sequence features and...

In information science, an ontology encompasses a representation, formal naming, and definitions of the categories, properties, and relations between the...

information can detail GFF version, sequence region, or species (full list of meta data types can be found at Sequence Ontology specifications). Servers that...

Ontology is the philosophical study of being. As one of the most fundamental concepts, being encompasses all of reality and every entity within it. To...

various ontology initiatives, amongst which are: The Generic Model Organism Project (GMOD) Gene Ontology Consortium Sequence Ontology Ontology Lookup Service...

The Gene Ontology (GO) is a major bioinformatics initiative to unify the representation of gene and gene product attributes across all species. More specifically...

The Web Ontology Language (OWL) is a family of knowledge representation languages for authoring ontologies. Ontologies are a formal way to describe taxonomies...

process ontology refers to a universal model of the structure of the world as an ordered wholeness. Such ontologies are fundamental ontologies, in contrast...

Ensembl Gene Ontology DAS Genomics Unified Schema Manatee: Manual Annotation Tool Biocurator.org Open Biomedical Ontologies Sequence Ontology Project Biological...

CheBI ontology, the Disease Ontology, the Plant Ontology, the Sequence Ontology, the Ontology for Biomedical Investigations and the Protein Ontology. The...

organisms have been created, such as Plant-Pathogen Ontology, Plant-Associated Microbe Gene Ontology or DisGeNET. And some others have been implemented...

Chicco, Davide; Masseroli, Marco (2019). "Biological and Medical Ontologies: Protein Ontology (PRO)". Encyclopedia of Bioinformatics and Computational Biology...

In genetics, an expressed sequence tag (EST) is a short sub-sequence of a cDNA sequence. ESTs may be used to identify gene transcripts, and were instrumental...

mining of biological literature and the development of biological and gene ontologies to organize and query biological data. It also plays a role in the analysis...

BioPerl, Gramene, ENCODE, the Generic Model Organism Database, the Sequence Ontology and Cloud computing. Stein is also the original developer of CGI.pm...

Framework (RDF), for example, concepts that are part of an ontology defined using the Web Ontology Language (OWL), and people who are described using the...

multiple sequence alignment (MSA) and a family tree for each protein family in the library. PANTHER/X (PANTEHR index): Index contains abbreviated ontology which...

Gene Ontology (GO) term enrichment is a technique for interpreting sets of genes making use of the Gene Ontology system of classification, in which genes...

Supporting reasoning over inferred ontologies: A knowledge graph acquires and integrates information into an ontology and applies a reasoner to derive new...

genes are down or upregulated, and what gene ontology terms are recurrent or over-represented. RNA sequence analysis explores gene expression dynamics and...

have on the transcript. The set of consequence terms, defined by the Sequence Ontology (SO) can be currently assigned to each combination of an allele and...

The coding region of a gene, also known as the coding sequence (CDS), is the portion of a gene's DNA or RNA that codes for a protein. Studying the length...

"Oxford reference — Outron". Retrieved 26 September 2019. "The MISO Sequence Ontology Browser — Outron (SO:0001475)". Retrieved 26 September 2019. Clayton...

; Yandell, M.; Stein, L.; Durbin, R.; Ashburner, M. (2005). "The Sequence Ontology: A tool for the unification of genome annotations". Genome Biology...

In ontology, the theory of categories concerns itself with the categories of being: the highest genera or kinds of entities. To investigate the categories...

specification. vCards can be embedded in web pages. RDFa with the vCard Ontology can be used in HTML and various XML-family languages, e.g. SVG, MathML...

use of bio-ontologies (including the Gene Ontology, Protein Ontology, The Fission Yeast Phenotype Ontology FYPO, and the Sequence Ontology to describe...

genomic sequences". Genomics Proteomics Bioinformatics. 4 (1): 56–60. doi:10.1016/S1672-0229(06)60017-X. PMC 5054030. PMID 16689703. Sequence Ontology page...

Biomedical Ontologies (OBO), National Center for Biomedical Ontology (NCBO), contributing to the Gene Ontology Sequence Ontology, Uberon anatomy ontologies, and...

Phenotype Ontology (FYPO), Used to associate phenotypes with alleles of genes, in comparison to the phenotype of the reference strain Sequence Ontology - used...