Similarity Matrix of Proteins (SIMAP) is a database of protein similarities created using volunteer computing. It is freely accessible for scientific...

nucleotide similarity matrices are much simpler than protein similarity matrices. For example, a simple matrix will assign identical bases a score of +1 and...

bioinformatics, the BLOSUM (BLOcks SUbstitution Matrix) matrix is a substitution matrix used for sequence alignment of proteins. BLOSUM matrices are used to score...

Germinal matrix Hair matrix cell Matrix attachment region Matrix metalloproteinase Matrix protein PAM matrix Position-specific scoring matrix Similarity matrix...

alignments of proteins, the degree of similarity between amino acids occupying a particular position in the sequence can be interpreted as a rough measure of how...

divergent proteins. The probabilities used in the matrix calculation are computed by looking at "blocks" of conserved sequences found in multiple protein alignments...

alignments for proteins. Each entry in a PAM matrix indicates the likelihood of the amino acid of that row being replaced with the amino acid of that column...

determination of protein structures from NMR or X-ray crystallography. Sometimes it is more convenient to express data as a similarity matrix. It is also...

A protein superfamily is the largest grouping (clade) of proteins for which common ancestry can be inferred (see homology). Usually this common ancestry...

multiple sequence alignment of a protein family reveals a common level of similarity throughout the lengths of the proteins, PIR refers to the family as...

database of RNA families IRESbase: A comprehensive database of experimentally validated internal ribosome entry sites. (See also: List of proteins in the...

family of proteases known as the metzincin superfamily. Collectively, these enzymes are capable of degrading all kinds of extracellular matrix proteins, but...

Families of Structurally Similar Proteins or FSSP is a database of structurally superimposed proteins generated using the "Distance-matrix ALIgnment"...

valuable tool for the comparison of proteins with low sequence similarity, where evolutionary relationships between proteins cannot be easily detected by...

Circuit topology Structural classification of proteins CATH HB plot Dot plot (bioinformatics) Self-similarity matrix Pietal, MJ.; Bujnicki, JM.; Kozlowski...

Penrose suggest a role of microtubule vibrations in neurons in the origin of consciousness. Accessory proteins including motor proteins regulate and link the...

protein 2, so named because it shares extensive similarity with known extracellular matrix proteins. GRCh38: Ensembl release 89: ENSG00000106823 – Ensembl...

algorithm is a dynamic programming algorithm. When comparing proteins, one uses a similarity matrix which assigns a score to each possible residue pair. The...

similarity matrix. Here, S(a, b) is the similarity of characters a and b. It uses a linear gap penalty, here called d. For example, if the similarity...

SIMAP or simap may refer to: Similarity Matrix of Proteins, a database of protein similarities simap.ch, the official gazette for Swiss government procurement...

the similarity measure. The algorithm was first proposed by Temple F. Smith and Michael S. Waterman in 1981. Like the Needleman–Wunsch algorithm, of which...

amino-acid sequences of proteins or the nucleotides of DNA and/or RNA sequences. A BLAST search enables a researcher to compare a subject protein or nucleotide...

(2011-09-03). "Information on SIMAP". Retrieved 2012-02-05. "SIMAP — Similarity Matrix of Proteins". 2012. Archived from the original on 2012-01-15. Retrieved...

replication, and a variety of metabolic processes. These proteins are divided into histone proteins, a class of proteins that bind to DNA and give chromosomes...

enzymes represent an ancient family of proteins with major similarities in genetic make-up that are present in a range of diverse organisms from unicellular...

among DNA, RNA, or proteins is typically inferred from their nucleotide or amino acid sequence similarity. Significant similarity is strong evidence that...

factorization of a real or complex matrix into a rotation, followed by a rescaling followed by another rotation. It generalizes the eigendecomposition of a square...

including unsupervised approaches such as similarity measures computed on the entity attributes, random walk and matrix factorization based approaches, and...

generates ATP in the matrix Specific transport proteins that regulate metabolite passage into and out of the mitochondrial matrix It contains more than...

of text and a mathematical technique called singular value decomposition (SVD) is used to reduce the number of rows while preserving the similarity structure...