• Thumbnail for Gene set enrichment analysis
    Gene set enrichment analysis (GSEA) (also called functional enrichment analysis or pathway enrichment analysis) is a method to identify classes of genes...
    37 KB (4,449 words) - 16:56, 19 November 2024
  • Thumbnail for Pathway analysis
    FCS approach was the Gene Set Enrichment Analysis (GSEA). Similarly to FCS, PTA accounts for high-throughput data for every FGS gene. In addition, specific...
    25 KB (2,906 words) - 16:21, 7 December 2024
  • transcriptomics called Gene Set Enrichment Analysis or GSEA. GSEA uses a collection of predefined gene sets to rank the lists of genes obtained from gene chip studies...
    6 KB (650 words) - 00:59, 17 August 2024
  • Thumbnail for Microarray analysis techniques
    for online analysis of microarray data —software FunRich - Perform gene set enrichment analysis —software Comparative Transcriptomics Analysis in Reference...
    31 KB (3,559 words) - 08:05, 7 June 2024
  • Thumbnail for Gene expression profiling
    Gene Set Enrichment Analysis (GSEA), which estimates significance of gene sets based on permutation of sample labels, and Generally Applicable Gene-set...
    30 KB (4,007 words) - 23:46, 24 July 2024
  • Gene Ontology (GO) term enrichment is a technique for interpreting sets of genes making use of the Gene Ontology system of classification, in which genes...
    7 KB (928 words) - 13:04, 23 June 2024
  • Clustering and Classification, Student's t-test, Gene Set Enrichment Analysis or Significance Analysis. MeV runs on Java. NGSUtils is a suite of software...
    164 KB (20,361 words) - 10:21, 2 November 2024
  • Thumbnail for Functional genomics
    background sets. Gene ontology based enrichment analysis are provided by DAVID and gene set enrichment analysis (GSEA), pathway based analysis by Ingenuity...
    32 KB (4,013 words) - 04:45, 28 May 2024
  • Pre-existing methods such as gene set enrichment analysis method attempt to infer. However, it did not construct a structured list of genes. SPIA (Signaling Pathway...
    7 KB (1,158 words) - 19:18, 18 August 2024
  • Thumbnail for CpG site
    of genes. A third study found more than 2,000 genes differentially methylated between colon cancers and adjacent mucosa. Using gene set enrichment analysis...
    51 KB (5,478 words) - 14:54, 3 December 2024
  • Gene Set Enrichment Analysis (GSEA) considers the perturbation of whole (functionally related) gene sets rather than of single genes. These gene sets...
    54 KB (6,510 words) - 15:22, 9 November 2024
  • Thumbnail for RNA-Seq
    RNA-Seq (redirect from Rna seq analysis)
    tools for gene set enrichment include web interfaces (e.g., ENRICHR, g:profiler, WEBGESTALT) and software packages. When evaluating enrichment results,...
    103 KB (11,110 words) - 05:04, 28 October 2024
  • 0000000000001997. PMC 5811331. PMID 29200009.} Human Gene Set: BIOCARTA_FIBRINOLYSIS_PATHWAY, Gene Set Enrichment Analysis, UC San Diego and Broad Institute Fibrinolysis...
    9 KB (1,074 words) - 23:37, 19 December 2024
  • Transcriptome (category Gene expression)
    the cell. One analysis method, known as gene set enrichment analysis, identifies coregulated gene networks rather than individual genes that are up- or...
    40 KB (4,861 words) - 00:33, 8 August 2024
  • interpretation of experimental data using the GO, for example via enrichment analysis. GO is part of a larger classification effort, the Open Biomedical...
    19 KB (2,282 words) - 19:24, 16 November 2024
  • about the genes, such as the chromosome name, strand, and start and positions, and aid result interpretation. Functional enrichment analysis identifies...
    33 KB (3,894 words) - 07:15, 23 July 2024
  • databases. For any uploaded gene list, the DAVID Resources now provides not only the typical gene-term enrichment analysis, but also new tools and functions...
    6 KB (677 words) - 18:19, 7 March 2024
  • infer the functions of previously unannotated genes. Transcriptome analysis has enabled the study of how gene expression changes in different organisms and...
    120 KB (12,516 words) - 05:37, 20 May 2024
  • mitochondrial disease. As a postdoctoral fellow he developed Gene Set Enrichment Analysis, an algorithm that is widely used in genomics and has been implemented...
    6 KB (451 words) - 08:00, 9 April 2024
  • Thumbnail for Gene regulatory network
    hand, some researchers hypothesize that the enrichment of network motifs is non-adaptive. In other words, gene regulatory networks can evolve to a similar...
    48 KB (6,096 words) - 01:34, 11 December 2024
  • Gene Ontology (GO) term enrichment is a technique used to identify which GO terms are over-represented or under-represented in a given set of genes....
    31 KB (3,629 words) - 01:32, 3 December 2024
  • pancreatic neuroendocrine tumors. Mutational signature analysis revealed significant enrichment of mutational processes linked to environmental exposures...
    10 KB (1,144 words) - 10:59, 12 January 2024
  • free gene annotation and analysis resource that helps biologists make sense of one or multiple gene lists. Metascape provides automated meta-analysis tools...
    6 KB (662 words) - 19:59, 17 April 2024
  • Thumbnail for Exome sequencing
    Target-enrichment methods allow one to selectively capture genomic regions of interest from a DNA sample prior to sequencing. Several target-enrichment strategies...
    41 KB (4,675 words) - 08:58, 18 March 2024
  • Thumbnail for Biological network inference
    Gene annotation databases are commonly used to evaluate the functional properties of experimentally derived gene sets. Annotation Enrichment Analysis...
    33 KB (3,831 words) - 22:35, 29 June 2024
  • Thumbnail for Epigenome-wide association study
    the distance between the CpGs and a gene promoter that is potentially regulated by this region. Enrichment analysis based on the genomic region has thus...
    32 KB (3,597 words) - 15:04, 21 April 2024
  • Thumbnail for Single-nucleotide polymorphism
    SNPs in the methylation of specific CpG sites. In addition, meQTL enrichment analysis using GWAS database, demonstrated that those associations are important...
    58 KB (6,250 words) - 19:03, 19 December 2024
  • MP, Tenenbaum D, Henikoff S (July 2019). "Peak calling by Sparse Enrichment Analysis for CUT&RUN chromatin profiling". Epigenetics & Chromatin. 12 (1):...
    16 KB (2,049 words) - 21:14, 24 October 2024
  • Thumbnail for Gene Wolfe
    Gene Rodman Wolfe (May 7, 1931 – April 14, 2019) was an American science fiction and fantasy writer. He was noted for his dense, allusive prose as well...
    41 KB (4,262 words) - 21:23, 16 December 2024
  • Thumbnail for Environmental enrichment
    that environmental enrichment may also lead to an increased rate of neurogenesis. Research on animals finds that environmental enrichment could aid the treatment...
    53 KB (6,227 words) - 16:45, 22 September 2024