The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in systems biology, and in particular in computational...

Suggested Upper Merged Ontology, a formal upper ontology Systems Biology Ontology (SBO), for computational models in biology SWEET, Semantic Web for...

Computational biology refers to the use of data analysis, mathematical modeling and computational simulations to understand biological systems and relationships...

Applied ontology is the application of Ontology for practical purposes. This can involve employing ontological methods or resources to specific domains...

The Gene Ontology (GO) is a major bioinformatics initiative to unify the representation of gene and gene product attributes across all species. More specifically...

information science and systems engineering, ontology engineering is a field which studies the methods and methodologies for building ontologies, which encompasses...

Ontology is the philosophical study of being. As one of the most fundamental concepts, being encompasses all of reality and every entity within it. To...

Colorado Boulder campus Systems Biology Ontology, a project for the development of Systems Biology-oriented vocabularies and ontologies Tougeki – Super Battle...

Ontology-based data integration involves the use of one or more ontologies to effectively combine data or information from multiple heterogeneous sources...

Basic Formal Ontology (BFO) is a top-level ontology developed by Barry Smith and his associates for the purposes of promoting interoperability among domain...

contexts, enabling systems change. Systems thinking draws on and contributes to systems theory and the system sciences. The term system is polysemic: Robert...

Christianity or other religious systems?" "Are there laws of biology like the laws of physics?" Ideas drawn from philosophical ontology and logic are being used...

factor ontology, also known as EFO, is an open-access ontology of experimental variables particularly those used in molecular biology. The ontology covers...

The BRENDA tissue ontology (BTO) represents a comprehensive structured encyclopedia. It provides terms, classifications, and definitions of tissues, organs...

Database BioPAX CellML MIASE MIRIAM Systems Biology Ontology Systems Biology Graphical Notation Encyclopedia of Systems Biology Dubitzky, W., Wolkenhauer, O...

process ontology refers to a universal model of the structure of the world as an ordered wholeness. Such ontologies are fundamental ontologies, in contrast...

information required in the annotation of models (MIRIAM) Systems Biology Ontology (SBO) Systems Biology Graphical Notation (SBGN) CyberUnits, a class library...

Information Requested in the Annotation of a Model) and SBO (the Systems Biology Ontology). Supports transparently reading and writing compressed files in...

Apollo Structured Vocabulary: an OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation". Journal...

mining combined with ontology has many applications where semantic ambiguity can impact the usefulness and efficiency of data systems.[citation needed] Applications...

In biology, a mechanism is a system of causally interacting parts and processes that produce one or more effects. Phenomena can be explained by describing...

of ontologies, such as the semi-automatic ontology generator DOG4DAG. The OBO file format is a biology-oriented language for building ontologies. It...

recommender systems. They are increasingly used in scientific research, with notable applications in fields such as genomics, proteomics, and systems biology. The...

M (2016). "Ontology-based prediction and prioritization of gene functional annotations". IEEE/ACM Transactions on Computational Biology and Bioinformatics...

terms in the philosophical lexicon" and suggests a three-part division: Ontological reductionism: a belief that the whole of reality consists of a minimal...

4 to add quantitative data and systems biology terms (such as Systems Biology Ontology). SBPAX export has been implemented by the pathway databases Signaling...

the languages SED-ML and PharmML, and ontologies such as the Systems Biology Ontology. He also created BioModels Database and the Identifiers.org URIs...

endeavor, systems theory brings together principles and concepts from ontology, the philosophy of science, physics, computer science, biology, and engineering...

different model systems. The Gene Ontology Consortium is helping to solve this problem. The first description of a comprehensive annotation system was published...

theories of integrative levels and of complex systems. For instance, the phenomenon of life as studied in biology is an emergent property of chemistry and...