BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm that was developed by Jim Kent at the University of California Santa Cruz (UCSC)...
17 KB (2,168 words) - 12:00, 18 December 2023
Look up blat in Wiktionary, the free dictionary. Blat or BLAT may refer to: BLAT (bioinformatics), an algorithm Blat (favors), a form of corruption in...
842 bytes (133 words) - 13:41, 27 May 2023
MicrobesOnline (section Bioinformatics)
on the homepage. Integrated Microbial Genomes System (IMG) BLAST BLAT (bioinformatics) FASTA format Gene ontology Hidden Markov model (HMM) Homology (biology)...
43 KB (4,652 words) - 21:02, 11 December 2023
(newts and salamanders) or Apoda (caecilians) in either BLAST or BLAT (bioinformatics). This absence in amphibians may be due to (1) a lack of records...
29 KB (2,205 words) - 08:37, 12 December 2023
are performed by BLAT, calculations are executed by R modules and is fully automated using Perl. There are few other bioinformatics tools that can call...
165 KB (20,486 words) - 20:59, 1 January 2025
expressed gene that has shown expression in many tissues. "BLAT". UCSC Genome Bioinformatics. "ARMCX5". Gene cards. "NCBI- nucleotide". "NCBI BLAST". "NCBI-protein"...
5 KB (167 words) - 12:59, 27 March 2022
Metatranscriptomics (category Bioinformatics)
spliced alignments of short sequence reads". Bioinformatics. 24 (16): i174–80. doi:10.1093/bioinformatics/btn300. PMID 18689821. Leimena MM, Ramiro-Garcia...
33 KB (4,188 words) - 15:44, 5 March 2024
BLAST (biotechnology) (category Bioinformatics algorithms)
of the most widely used bioinformatics programs for sequence searching. It addresses a fundamental problem in bioinformatics research. The heuristic algorithm...
38 KB (4,922 words) - 16:38, 18 August 2024
knowledge-base of divergence times among organisms". Bioinformatics. 22 (23): 2971–2. doi:10.1093/bioinformatics/btl505. PMID 17021158. "PSORTII". GenScript....
9 KB (701 words) - 02:02, 10 March 2024
MUMmer (category Bioinformatics software)
MUMmer is a bioinformatics software system for sequence alignment. It is based on the suffix tree data structure. It has been used for comparing different...
8 KB (819 words) - 23:13, 21 January 2024
Biotechnology Information, U.S. National Library of Medicine. "UCSC Genome Bioinformatics BLAT". University of California - Santa Cruz. March 2006. Retrieved 2009-05-14...
2 KB (267 words) - 06:58, 26 December 2019
List of sequence alignment software (category Lists of bioinformatics software)
Data technologies". Bioinformatics. 31 (24): 4003–5. doi:10.1093/bioinformatics/btv506. PMID 26323715. Kent, W. J. (2002). "BLAT---The BLAST-Like Alignment...
69 KB (2,358 words) - 02:31, 15 December 2024
UCSC Genome Browser (category Bioinformatics software)
downloadable data files, and documentation can all be found on the UCSC Genome Bioinformatics website. Initially built and still managed by Jim Kent, then a graduate...
24 KB (1,641 words) - 06:11, 26 October 2023
protein may be found in. All orthologous proteins were found with BLAST or BLAT programs.[by whom?] "hematopoietic SH2 domain containing [ Homo sapiens (human)...
10 KB (929 words) - 08:18, 12 December 2023
analysis. For the similarity analysis, MG-RAST employs sBLAT, a parallelized version of the BLAT algorithm using OpenMP. The search is conducted against...
11 KB (980 words) - 16:48, 7 May 2024
Alignment Search Tool)". NCBI. Retrieved 3 May 2013. Kent, Jim. "BLAT". UCSC Genome Bioinformatics. Retrieved 27 March 2013. "Homo sapiens FGFR1 oncogene partner...
18 KB (1,126 words) - 22:57, 21 August 2024
SAM (file format) (category Bioinformatics)
Sequence Alignment/Map format and SAMtools" (PDF). Bioinformatics. 25 (16): 2078–2079. doi:10.1093/bioinformatics/btp352. ISSN 1367-4803. PMC 2723002. PMID 19505943...
14 KB (1,100 words) - 13:02, 30 January 2024
great orthologs outside of primates. These orthologs were gathered from BLAT. and BLAST searches Due to there being 21 other members of the NBPF gene...
6 KB (562 words) - 22:33, 21 August 2024
4 Apr 2015. "NHLRC2". UniGene EST Profiles. Retrieved 4 Apr 2015. "BLAST". NCBI BLAST. "BLAT". UCSC Genome Bioinformatics. Retrieved 4 February 2015....
7 KB (643 words) - 19:50, 3 January 2024
PRAB- Gerland Rhone-Alpes Bioinformatics Pole Gerland Site - Institute of biology and protein chemistry. 2019-05-04. "BLAT Search Genome". University...
22 KB (1,794 words) - 01:49, 10 March 2024
dead link] "PSICQUIC View". www.ebi.ac.uk. Retrieved 2020-12-17. "Human BLAT Search". genome.ucsc.edu. Retrieved 2020-12-17. "ExPASy - Compute pI/Mw tool"...
20 KB (1,337 words) - 01:31, 4 November 2023
original on 2021-12-02. Retrieved 2015-03-11. Jim Kent. "BLAT". UCSC Genome Bioinformatics. Retrieved 2015-03-11. "miRBase: the microRNA database". University...
20 KB (1,684 words) - 19:14, 15 December 2024
represents a small selection of orthologs found using searches in BLAST and BLAT, sorted by % identity. This is by no means a comprehensive list, however...
12 KB (1,086 words) - 06:53, 5 January 2025
"Home - GEO - NCBI". "Compartments - Prr32". "ExPASy: SIB Bioinformatics Resource Portal - Home". "ExPASy: SIB Bioinformatics Resource Portal - Home"....
9 KB (1,044 words) - 13:38, 9 February 2023
ChIP-on-chip (category Bioinformatics)
(2009). "CoCAS: a ChIP-on-chip analysis suite". Bioinformatics. 25 (7): 954–955. doi:10.1093/bioinformatics/btp075. ISSN 1460-2059. PMC 2660873. PMID 19193731...
25 KB (3,057 words) - 05:34, 12 December 2023
Improvement WormBase WormBase ParaSite Ensembl European Bioinformatics Institute BLAST BLAT WormBase VectorBase List of sequenced plant genomes List...
29 KB (2,996 words) - 12:55, 1 July 2024
experts, through visual programming or Python scripting. Extensions for bioinformatics and text mining RapidMiner – Data mining software written in Java, fully...
54 KB (4,558 words) - 11:52, 28 December 2024
www.cbs.dtu.dk. Retrieved 2020-05-21. "Motif Scan". myhits.sib.swiss. Retrieved 2020-05-21. "Human BLAT Search". genome.ucsc.edu. Retrieved 2020-12-18....
12 KB (983 words) - 22:36, 1 October 2024
signals by a Kohonen self-organizing map". Bioinformatics. 21 (9): 1846–1852. doi:10.1093/bioinformatics/bti299. ISSN 1367-4803. PMID 15691858. Blom...
18 KB (1,883 words) - 08:31, 12 December 2023
structure prediction system for membrane proteins". Bioinformatics. 14 (4): 378–9. doi:10.1093/bioinformatics/14.4.378. PMID 9632836. Combet C, Blanchet C,...
17 KB (1,580 words) - 02:45, 17 January 2024