A reference genome (also known as a reference assembly) is a digital nucleic acid sequence database, assembled by scientists as a representative example...
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The Genome Reference Consortium (GRC) is an international collective of academic and research institutes with expertise in genome mapping, sequencing...
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haploid reference genome, of which there are more than three billion. The genome of any given individual is unique; mapping the human genome involved...
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These are usually treated separately as the nuclear genome and the mitochondrial genome. Human genomes include both protein-coding DNA sequences and various...
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genetics, a genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes...
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Human Pangenome Reference is a collection of genomes from a diverse cohort of individuals compiled by the Human Pangenome Reference Consortium (HPRC)...
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This approach does not require a reference genome to reconstruct the transcriptome, and is typically used if the genome is unknown, incomplete, or substantially...
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N50, L50, and related statistics (redirect from N50 Statistic (Genome assembly))
weight given to the longer contigs. It is used widely in genome assembly, especially in reference to contig lengths within a draft assembly. There are also...
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Genome projects are scientific endeavours that ultimately aim to determine the complete genome sequence of an organism (be it an animal, a plant, a fungus...
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sequence assembly method of creating a transcriptome without the aid of a reference genome. As a result of the development of novel sequencing technologies, the...
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Genomics (redirect from Genome biology)
focusing on the structure, function, evolution, mapping, and editing of genomes. A genome is an organism's complete set of DNA, including all of its genes as...
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Third-generation sequencing (section Genome assembly)
When a reference genome is available, as one is in the case of human, newly sequenced reads could simply be aligned to the reference genome in order...
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and interpretation of these complex data. Genome Assembly and Annotation: Give access to the reference genome assembly, serving as a framework for overlaying...
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sequenced genome is high, this leads to a high compression ratio. Unlike the SAM/BAM formats, FASTQ files do not specify a reference genome. Alignment-based...
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decline of genome sequencing costs and to an astonishingly rapid accumulation of genomic data. These technologies are enabling ambitious genome sequencing...
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sequences of DNA, which presents challenges to mapping its reads to a reference genome. After purchasing Complete Genomics, the Beijing Genomics Institute...
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an ‘Indian reference genome' grid. The initiative is funded by Department of Biotechnology (DBT) to sequence at least 10,000 Indian genomes in phase 1...
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Bacillus anthracis (section Genome structure)
anthracis measures about 3 to 5 μm long and 1 to 1.2 μm wide. The reference genome consists of a 5,227,419 bp circular chromosome and two extrachromosomal...
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threshold. For example, a G nucleotide present at a specific location in a reference genome may be replaced by an A in a minority of individuals. The two possible...
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longer ones without the use of a reference genome. These are most commonly used in bioinformatic studies to assemble genomes or transcriptomes. Two common...
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mosses. Azolla filiculoides is one of just two fern species for which a reference genome has been published. It is believed that this genus grew so prolifically...
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Metagenomics (redirect from Community genome)
metagenome referenced the idea that a collection of genes sequenced from the environment could be analyzed in a way analogous to the study of a single genome. In...
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Red wolf (section Whole-genome evidence)
relationships based on the only reference genome available, that of the Boxer dog. In 2017, the first reference genome of the wolf Canis lupus lupus was...
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Tomato (category Articles needing additional references from April 2022)
tomato reference genome". BMC Genomics. 22 (1): 898. doi:10.1186/s12864-021-08212-x. ISSN 1471-2164. PMC 8672587. PMID 34911432. Tomato genome is sequenced...
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high-quality reference genome is available, these tags may be matched to their corresponding gene in the genome. If a reference genome is unavailable...
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comparing their genes or whole genomes. While the first bonobo genome was published in 2012, a high-quality reference genome became available only in 2021...
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Hardison; Haussler; Miller (2003). "Human-mouse alignments with BLASTZ". Genome Research. 13 (1): 103–107. doi:10.1101/gr.809403. PMC 430961. PMID 12529312...
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important model organisms in biology and medicine. The complete mouse reference genome was sequenced in 2002. House mice have an adult body length (nose to...
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Pea (category Articles needing additional references from March 2017)
develop the first pea reference genome, and the draft assembly was officially announced in September 2019. It covers 88% of the genome (3.92Gb) and predicted...
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