bioinformatics, the BLOSUM (BLOcks SUbstitution Matrix) matrix is a substitution matrix used for sequence alignment of proteins. BLOSUM matrices are used...

evolutionary change. The BLOSUM-62 matrix is one of the best substitution matrices for detecting weak protein similarities. BLOSUM matrices with high numbers...

that the BLOSUM matrices are much more effective. The BLOSUM series were generated by comparing a number of divergent sequences. The BLOSUM series are...

approximated by compounding small changes that occur over short time scales. The BLOSUM (BLOck SUbstitution Matrix) series of matrices rectifies this problem. Henikoff...

by the BLOSUM matrices. Although both matrices produce similar scoring outcomes they were generated using differing methodologies. The BLOSUM matrices...

scoring matrices, each with further alterations for specific scenarios: PAM BLOSUM When aligning sequences there are often gaps (i.e. indels), sometimes large...

became a teacher at St. Friedeswiede. Blosum Pricket (ブロサム＝プリケト, Burosamu Puriketo) Voiced by: Hōchū Ōtsuka Blosum Pricket is the Marquis of the town of...

together with his wife Jorja Henikoff, introduced the BLOSUM substitution matrices. The BLOSUM matrices are widely used for sequence alignment of proteins...

of the available sequences against the query by a scoring matrix such as BLOSUM 62. The highest scoring sequences represent the closest relatives of the...

substitutions may be identified using substitution matrices such as PAM and BLOSUM. Highly scoring alignments are assumed to be from homologous sequences....

search results, although the BLOSUM matrices have superseded the PAM log-odds matrices in this context because the BLOSUM matrices appear to be more sensitive...

lyrics. The concept is adapted from a sequence alignment technique using BLOSUM (BLOcks SUbstitution Matrix). They were able to detect rhymes undetectable...

amino acid mutations. Another common series of scoring matrices, known as BLOSUM (Blocks Substitution Matrix), encodes empirically derived substitution probabilities...

amino acids is usually more complicated than that of the bases. See PAM, BLOSUM. Gap penalty designates scores for insertion or deletion. A simple gap penalty...

suspicious plants. Blosum stops her and explains the area is home to many dangerous "mystery spots". Someone then informs Blosum about a sick resident...

similarity function σ ( x , y ) {\displaystyle \sigma (x,y)} (e.g. PAM, BLOSUM,...) affine gap penalty: g ( k ) = α + β k {\displaystyle g(k)=\alpha +\beta...

J3 (= TIM), TVM, GTR), 14 empirical models of amino acid substitution (BLOSUM, cpREV, Dayhoff, JTT, LG, mtArt, mtMam, mtREV, PMB, rtREV, betHIV, witHIV...