The Burrows–Wheeler transform (BWT, also called block-sorting compression) rearranges a character string into runs of similar characters. This is useful...
39 KB (3,525 words) - 08:55, 23 September 2024
inverse Burrows—Wheeler transform can be considered to generate a set of Lyndon words. It can be shown that if we perform the inverse Burrows—Wheeler transform...
32 KB (3,515 words) - 19:08, 29 October 2024
Michael Burrows, FRS (born 1963) is a British computer scientist and the creator of the Burrows–Wheeler transform, currently working for Google. Born...
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MTF transform may actually increase the entropy. An important use of the MTF transform is in Burrows–Wheeler transform based compression. The Burrows–Wheeler...
13 KB (1,603 words) - 08:01, 9 August 2024
Wheeler's contributions to the field included work on the Electronic Delay Storage Automatic Calculator (EDSAC) in the 1950s and the Burrows–Wheeler transform...
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techniques, such as run-length encoding (RLE), Burrows–Wheeler transform (BWT), move-to-front transform (MTF), and Huffman coding. bzip2 compresses data...
21 KB (2,818 words) - 22:23, 25 October 2024
List of sequence alignment software (redirect from Burrows-Wheeler Aligner)
Durbin, R. (2009). "Fast and accurate short read alignment with Burrows–Wheeler transform". Bioinformatics. 25 (14): 1754–1760. doi:10.1093/bioinformatics/btp324...
69 KB (2,358 words) - 02:53, 19 August 2024
BWT may refer to the Burrows–Wheeler transform, an algorithm used in file compression BWT, an Austrian wastewater company Bridgwater railway station,...
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transform Burrows–Wheeler transform (data compression) Chirplet transform Distance transform Fractal transform Gelfand transform Hadamard transform Hough...
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FM-index is a compressed full-text substring index based on the Burrows–Wheeler transform, with some similarities to the suffix array. It was created by...
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matching on a 900 MB dictionary window, followed by bzip2-based Burrows–Wheeler transform and entropy coding (Huffman) on 900 kB output chunks. rzip operates...
10 KB (1,266 words) - 21:54, 6 October 2023
and less expansion of incompressible data. Bzip2 – The standard Burrows–Wheeler transform algorithm. Bzip2 uses two reversible transformations; BWT, then...
11 KB (1,244 words) - 07:02, 3 November 2024
The speed increase of Bowtie is partly due to implementing the Burrows–Wheeler transform for aligning, which reduces the memory footprint (typically to...
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typically operates with a 32768-byte window, whereas bzip2 uses a Burrows–Wheeler transform roughly 27 times bigger. xz defaults to 8 MiB but supports significantly...
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Li's papers on SAMtools and BWA (sequence alignment using the Burrows–Wheeler transform) have both been cited over 16,000 times. In 2012, Li won the Benjamin...
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Look-and-say sequence Comparison of graphics file formats Golomb coding Burrows–Wheeler transform Recursive indexing Run-length limited Bitmap index Forsyth–Edwards...
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Thitimajshima introduce Turbo codes 1994 – Michael Burrows and David Wheeler publish the Burrows–Wheeler transform, later to find use in bzip2 1995 – Benjamin...
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probabilistic models, such as prediction by partial matching. The Burrows–Wheeler transform can also be viewed as an indirect form of statistical modelling...
68 KB (7,525 words) - 11:05, 1 November 2024
improving global context and compressibility following a Burrows–Wheeler transform. Following this transform, files tend to have large regions with locally high...
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by Descent Detection in Biobank-Scale Cohorts using Positional Burrows–Wheeler Transform Parente: identifies IBD segments between pairs of individuals...
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algorithm developed by Peter Shor 1994 – Burrows–Wheeler transform developed by Michael Burrows and David Wheeler 1994 – Bootstrap aggregating (bagging)...
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compression format. The compression algorithm is a Burrows–Wheeler transform followed by a move-to-front transform and finally Huffman coding. .F, .?XF Freeze/melt...
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find repeated data, and can be used for the sorting stage of the Burrows–Wheeler transform. Variants of the LZW compression schemes use suffix trees (LZSS)...
29 KB (3,707 words) - 16:52, 11 October 2024
and Zstandard Arithmetic coding – Entropy encoding Burrows–Wheeler transform reversible transform for making textual data more compressible, used by bzip2...
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command-line utility producing a permuted index Concordancer Burrows–Wheeler transform Suffix tree Manning, C. D.; Schütze, H. (1999). Foundations of...
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such tool, followed by Orcom and Mince. BEETL uses a generalized Burrows–Wheeler transform for reordering reads, and HARC achieves better performance with...
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created ELIZA David Wheeler – cocreated subroutine; designed WAKE; co-designed Tiny Encryption Algorithm, XTEA, Burrows–Wheeler transform Molly White – HubSpot;...
44 KB (3,747 words) - 16:10, 22 September 2024
factorizations may be used as part of a bijective variant of the Burrows–Wheeler transform for data compression, and in algorithms for digital geometry....
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method bucket sort bucket trie buddy system buddy tree build-heap Burrows–Wheeler transform (BWT) busy beaver Byzantine generals cactus stack Calculus of...
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the Bowtie sequence alignment algorithm, which implements the Burrows–Wheeler transform in order to improve the scalability of sequence alignment. As...
4 KB (228 words) - 18:17, 3 December 2023