A reference genome (also known as a reference assembly) is a digital nucleic acid sequence database, assembled by scientists as a representative example...
39 KB (3,338 words) - 06:11, 22 May 2024
The Genome Reference Consortium (GRC) is an international collective of academic and research institutes with expertise in genome mapping, sequencing...
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haploid reference genome, of which there are more than three billion. The "genome" of any given individual is unique; mapping the "human genome" involved...
66 KB (7,381 words) - 14:33, 19 July 2024
These are usually treated separately as the nuclear genome and the mitochondrial genome. Human genomes include both protein-coding DNA sequences and various...
99 KB (10,152 words) - 15:40, 20 July 2024
genetics, a genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes...
79 KB (7,293 words) - 04:53, 22 July 2024
Human Pangenome Reference is a collection of genomes from a diverse cohort of individuals compiled by the Human Pangenome Reference Consortium (HPRC)...
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This list of sequenced animal genomes contains animal species for which complete genome sequences have been assembled, annotated and published. Substantially...
373 KB (28,068 words) - 20:39, 30 June 2024
an ‘Indian reference genome' grid. The initiative is funded by Department of Biotechnology (DBT) to sequence at least 10,000 Indian genomes in phase 1...
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This approach does not require a reference genome to reconstruct the transcriptome, and is typically used if the genome is unknown, incomplete, or substantially...
101 KB (11,026 words) - 04:29, 15 July 2024
N50, L50, and related statistics (redirect from N50 Statistic (Genome assembly))
weight given to the longer contigs. It is used widely in genome assembly, especially in reference to contig lengths within a draft assembly. There are also...
11 KB (1,550 words) - 19:09, 11 January 2024
and interpretation of these complex data. Genome Assembly and Annotation: Give access to the reference genome assembly, serving as a framework for overlaying...
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threshold. For example, a G nucleotide present at a specific location in a reference genome may be replaced by an A in a minority of individuals. The two possible...
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sequence assembly method of creating a transcriptome without the aid of a reference genome. As a result of the development of novel sequencing technologies, the...
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Genomics (redirect from Genome biology)
focusing on the structure, function, evolution, mapping, and editing of genomes. A genome is an organism's complete set of DNA, including all of its genes as...
78 KB (7,544 words) - 04:31, 15 July 2024
Genome projects are scientific endeavours that ultimately aim to determine the complete genome sequence of an organism (be it an animal, a plant, a fungus...
18 KB (1,822 words) - 14:38, 19 July 2024
Bacillus anthracis (section Genome structure)
anthracis measures about 3 to 5 μm long and 1 to 1.2 μm wide. The reference genome consists of a 5,227,419 bp circular chromosome and two extrachromosomal...
40 KB (4,677 words) - 14:11, 20 June 2024
mosses. Azolla filiculoides is one of just two fern species for which a reference genome has been published. It is believed that this genus grew so prolifically...
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high-quality reference genome is available, these tags may be matched to their corresponding gene in the genome. If a reference genome is unavailable...
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sequences of DNA, which presents challenges to mapping its reads to a reference genome. After purchasing Complete Genomics, the Beijing Genomics Institute...
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decline of genome sequencing costs and to an astonishingly rapid accumulation of genomic data. These technologies are enabling ambitious genome sequencing...
18 KB (1,420 words) - 11:56, 28 March 2024
The UCSC Genome Browser is an online and downloadable genome browser hosted by the University of California, Santa Cruz (UCSC). It is an interactive website...
24 KB (1,641 words) - 06:11, 26 October 2023
malaria genome. This site contains the reference genome sequence and working draft assembly for Plasmodium falciparum from PlasmoDb, the Plasmodium genome database...
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sequenced genome is high, this leads to a high compression ratio. Unlike the SAM/BAM formats, FASTQ files do not specify a reference genome. Alignment-based...
31 KB (3,687 words) - 05:01, 24 May 2024
Third-generation sequencing (section Genome assembly)
When a reference genome is available, as one is in the case of human, newly sequenced reads could simply be aligned to the reference genome in order...
33 KB (3,988 words) - 15:39, 3 April 2024
Coordinating Center for the NHGRI Genome Sequencing Program Talking Glossary of Genetic Terms Human reference genome Samorodnitsky, Dan (2020-11-09). "The...
12 KB (1,144 words) - 05:34, 28 April 2024
Red wolf (section Whole-genome evidence)
relationships based on the only reference genome available, that of the Boxer dog. In 2017, the first reference genome of the wolf Canis lupus lupus was...
110 KB (12,838 words) - 18:26, 19 July 2024
reference Korean and whole population genomes in 2006 by KOBIC, KRIBB and NCSRD, KRISS, Daejeon in Korea. From 2009, KGP was supported by the Genome Research...
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longer ones without the use of a reference genome. These are most commonly used in bioinformatic studies to assemble genomes or transcriptomes. Two common...
19 KB (2,104 words) - 11:08, 8 July 2024
Metagenomics (redirect from Community genome)
metagenome referenced the idea that a collection of genes sequenced from the environment could be analyzed in a way analogous to the study of a single genome. In...
88 KB (9,198 words) - 10:06, 2 June 2024