The Smith–Waterman algorithm performs local sequence alignment; that is, for determining similar regions between two strings of nucleic acid sequences...

Smith-Waterman algorithm does. The Smith-Waterman algorithm was an extension of a previous optimal method, the Needleman–Wunsch algorithm, which was the...

Science Foundation Smith–Waterman algorithm Waterman butterfly projection USS Waterman, a 1943 Cannon-class destroyer escort Watermans (disambiguation)...

searches for local alignment detection in a database using the Smith–Waterman algorithm. FASTA is pronounced "fast A", and stands for "FAST-All", because...

matching between unrectified or distorted images. Wagner–Fischer algorithm Smith–Waterman algorithm Sequence mining Levenshtein distance Dynamic time warping...

Temple Ferris Smith (born March 7, 1939) is an emeritus professor in biomedical engineering who helped to develop the Smith-Waterman algorithm with Michael...

computer science, Thompson's construction algorithm, also called the McNaughton–Yamada–Thompson algorithm, is a method of transforming a regular expression...

architecture adds support for new instructions, including the Smith–Waterman algorithm. Like Ampere, TensorFloat-32 (TF-32) arithmetic is supported. The...

MHz Shortwave radiation, in visible and near visible bands Smith–Waterman algorithm, algorithm for performing local sequence alignment Sport wagon or crossover...

This is further generalized by DNA sequence alignment algorithms such as the Smith–Waterman algorithm, which make an operation's cost depend on where it...

This is further generalized by DNA sequence alignment algorithms such as the Smith–Waterman algorithm, which make an operation's cost depend on where it...

Needleman–Wunsch algorithm: find global alignment between two sequences Smith–Waterman algorithm: find local sequence alignment Exchange sorts Bubble sort: for...

developed by Carl Pomerance 1981 – Smith–Waterman algorithm developed by Temple F. Smith and Michael S. Waterman 1983 – Simulated annealing developed...

particular, the Smith-Waterman algorithm (developed with Temple F. Smith) is the basis for many sequence alignment programs. In 1988, Waterman and Eric Lander...

linear in the lengths of the remaining sequences, so the time for this algorithm would be O ( 2 n 1 ∑ i > 1 n i ) . {\displaystyle O\left(2^{n_{1}}\sum...

use of closely related algorithms such as Needleman–Wunsch algorithm or Smith–Waterman algorithm.[citation needed] The algorithm can be used with any set...

Wikibooks has a book on the topic of: Algorithm Implementation/Strings/Longest common substring In computer science, a longest common substring of two...

mining BLAST String searching algorithm Alignment-free sequence analysis UGENE Needleman–Wunsch algorithm Smith-Waterman algorithm Sequence analysis in social...

Metaphone Needleman–Wunsch algorithm Plagiarism detection Regular expressions for fuzzy and non-fuzzy matching Smith–Waterman algorithm Soundex String metric...

earlier publication showing a significant acceleration of the Smith-Waterman algorithm for aligning two sequences. A profile HMM is a variant of an HMM...

Naiouf, Marcelo; Prieto-Matias, Manuel (2016-06-30). "OSWALD: OpenCL Smith–Waterman on Altera's FPGA for Large Protein Databases". International Journal...

This is further generalized by DNA sequence alignment algorithms such as the Smith–Waterman algorithm, which make an operation's cost depend on where it...

automaton Sequence alignment BLAST Hirschberg's algorithm Needleman–Wunsch algorithm Smith–Waterman algorithm Data structure DAFSA Suffix array Suffix automaton...

list skip search slope selection Smith algorithm Smith–Waterman algorithm smoothsort solvable problem sort algorithm sorted array sorted list sort in-place...

an algorithm for compiling a regular expression to an NFA that can efficiently perform pattern matching on strings. Conversely, Kleene's algorithm can...

name, it matches any value, but does not bind the value to any name. Algorithms for matching wildcards in simple string-matching situations have been...

insertions and deletions. BFAST works with the Smith–Waterman algorithm. Bowtie is a short aligner using an algorithm based on the Burrows–Wheeler transform and...

selecting the optimum. Different variants exist, see Smith–Waterman algorithm and Needleman–Wunsch algorithm. The Tower of Hanoi or Towers of Hanoi is a mathematical...

complexity of source code; greater risk of bugs This table compares the algorithmic traits of string and rope implementations, not their raw speed. Array-based...

of one sequence with a contiguous sub-section of another. The Smith-Waterman algorithm is motivated by giving scores for matches and mismatches. Matches...