molecular biology, protein threading, also known as fold recognition, is a method of protein modeling which is used to model those proteins which have the...

Threading may refer to: Thread (computing), a programming technique Threading (epilation), a hair removal method Threading (manufacturing), the process...

in protein structure prediction, including homology modeling, protein threading, ab initio methods, secondary structure prediction, and transmembrane...

prediction of protein structure from its sequence have been developed. Ab initio prediction methods use just the sequence of the protein. Threading and homology...

[page needed] Protein threading can be used when a reliable homologue for the query sequence cannot be found. This method begins by obtaining a query sequence and...

Protein structure prediction is the inference of the three-dimensional structure of a protein from its amino acid sequence—that is, the prediction of its...

Supporting his hypothesis, Blobel discovered that many proteins have a short amino acid sequence at one end that functions like a postal code specifying...

researchers can use protein threading software, such as RAPTOR to create a highly reliable model of the protein. Protein threading is more effective than...

remote homology recognition and protein threading techniques, RaptorX is able to regularly generate reliable protein models when the widely used PSI-BLAST...

homology modeling fold recognition (also called protein threading; note that this naming is incorrect as threading is a method) de novo structure prediction...

Hsp100. Hsp100 proteins have aromatic pore loops that are used for threading activity to disentangle single polypeptides. This threading activity can be...

understand the organizational principles within nucleic acid and protein sequences. Image and signal processing allow extraction of useful results from...

(May 1993). "An empirical energy function for threading protein sequence through the folding motif". Proteins. 16 (1): 92–112. doi:10.1002/prot.340160110...

gene is a sequence of nucleotides in DNA that is transcribed to produce a functional RNA. There are two types of molecular genes: protein-coding genes...

conserved than sequence and thus sequence-based modeling may not be the most accurate way to predict protein structures. Threading bases structural modeling...

signal sequence except that it is not cleaved. They are a kind of target peptide. Signal peptides function to prompt a cell to translocate the protein, usually...

deleted from a DNA or RNA sequence of an organism's genome. Point mutations have a variety of effects on the downstream protein product—consequences that...

of proteins. *Sequence type: protein or nucleotide *Sequence type: protein or nucleotide **Alignment type: local or global *Sequence type: protein or...

protein structure prediction refers to an algorithmic process by which protein tertiary structure is predicted from its amino acid primary sequence....

from amino acid sequences. It detects structure templates from the Protein Data Bank by a technique called fold recognition (or threading). The full-length...

comparative modeling of protein, refers to constructing an atomic-resolution model of the "target" protein from its amino acid sequence and an experimental...

homologs. The optimal "threading" of a protein sequence onto a known structure and the production of an optimal multiple sequence alignment have been shown...

initiator proteins to the origin sequences. Because E. coli methylates GATC DNA sequences, DNA synthesis results in hemimethylated sequences. This hemimethylated...

first to determine the sequence of a gene: the gene for Bacteriophage MS2 coat protein. Fiers' group expanded on their MS2 coat protein work, determining the...

sequences. Given an mRNA sequence, it is trivial to derive a unique genomic DNA sequence from which it had to have been transcribed. Given a protein sequence...

functions written in the programming language Java for manipulating sequences, protein structures, file parsers, Common Object Request Broker Architecture...

molecules and use the RNA's sequence of nucleotides to determine the sequence of amino acids needed to generate a protein. Amino acids are selected and...

can be bound by proteins (activators) to increase the likelihood that transcription of a particular gene will occur. These proteins are usually referred...

Under the genetic code, these RNA strands specify the sequence of amino acids within proteins in a process called translation. Within eukaryotic cells...

where no existing template structures were available from proteins with a partially similar sequence. A team that used AlphaFold 2 (2020) repeated the placement...