WPGMA (Weighted Pair Group Method with Arithmetic Mean) is a simple agglomerative (bottom-up) hierarchical clustering method, generally attributed to...
11 KB (1,714 words) - 07:17, 9 July 2024
(bottom-up) hierarchical clustering method. It also has a weighted variant, WPGMA, and they are generally attributed to Sokal and Michener. Note that the...
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include complete linkage clustering, average linkage clustering (UPGMA and WPGMA), and Ward's method. In the naive algorithm for agglomerative clustering...
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clustering Molecular clock Neighbor-joining Single-linkage clustering UPGMA WPGMA Sorensen T (1948). "A method of establishing groups of equal amplitude in...
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reconstruct the true tree with high probability. Compared with UPGMA and WPGMA, neighbor joining has the advantage that it does not assume all lineages...
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Computational phylogenetics (section UPGMA and WPGMA)
subtrees. The UPGMA (Unweighted Pair Group Method with Arithmetic mean) and WPGMA (Weighted Pair Group Method with Arithmetic mean) methods produce rooted...
64 KB (8,082 words) - 00:29, 7 November 2024
and a distance d are: Some of these can only be recomputed recursively (WPGMA, WPGMC), for many a recursive computation with Lance-Williams-equations...
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lineages. The UPGMA (Unweighted Pair Group Method with Arithmetic mean) and WPGMA (Weighted Pair Group Method with Arithmetic mean) methods produce rooted...
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construction, ultrametric distances are also utilized by the UPGMA and WPGMA methods. These algorithms require a constant-rate assumption and produce...
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complete linkage clustering (the maximum of object distances), and UPGMA or WPGMA ("Unweighted or Weighted Pair Group Method with Arithmetic Mean", also known...
69 KB (8,833 words) - 19:53, 19 November 2024
Correspondence between HAC linkages and BIRCH distances HAC Linkage BIRCH distance UPGMA D2² WPGMA D0² Ward 2 D4²...
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Vicarious (company) Viterbi algorithm Vowpal Wabbit WACA clustering algorithm WPGMA Ward's method Weasel program Whitening transformation Winnow (algorithm)...
39 KB (3,386 words) - 20:13, 10 November 2024