SourceForge. "Open-Source PyMOL". Schrodinger, Inc. 5 November 2021. Retrieved 7 November 2021. "PyMOL | pymol.org". pymol.org. Retrieved 7 November 2021...
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any version to Schrodinger, LLC. "PyMOL | pymol.org". pymol.org. Retrieved 2021-11-07. Open-Source Philosophy PyMOL is a commercial product, but we make...
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WHATCHECK, PROCHECK, and does its own internal Ramachandran Plot STING Pymol with the DynoPlot extension VMD, distributed with dynamic Ramachandran plot...
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telomerase RNA". J. Mol. Biol. 384 (5): 1249–61. doi:10.1016/j.jmb.2008.10.005. PMC 2660571. PMID 18950640.; rendered with PyMOL Nissen P, Ippolito JA...
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reconstruction Mari (software), 3D texturing and painting software PyMOL, a 3D molecular viewer QuteMol, a 3D molecular renderer Really Slick Screensavers, 3D Screensavers...
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Warnecke A, Sandalova T, Achour A, Harris RA (November 2014). "PyTMs: a useful PyMOL plugin for modeling common post-translational modifications". BMC...
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molecular graphics systems Molecular graphics Molecule editor Proteopedia PyMOL SAMSON SMILES Jmol translations Chen, Jim X. (2008), Springer (ed.), Guide...
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produce campus humor magazine The Yale Record. In 2000, he launched the PyMOL open-source molecular viewer in an attempt to demonstrate the practical...
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of molecular and electronic structure". "PyMOL License". GitHub. Jan 8, 2010. Retrieved 2023-03-27. "PyMOL Molecular Viewer". Retrieved 24 September...
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UCSF Chimera has a simple interface to Modeller. PyMod is a free and open-source plugin for PyMOL and has a comprehensive interface for Modeller. It...
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output of dissected secondary structural elements, and a corresponding PyMol-loadable script to visualize the assigned secondary structural elements...
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computational platform for drug discovery and materials science LiveDesign PyMOL Revenue $217 Million (2023) Number of employees 1015 Website schrodinger...
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complex from Saccharomyces cerevisiae by use of an epitope addition method". Mol Cell Biol. 8 (5): 2159–65. doi:10.1128/mcb.8.5.2159-2165.1988. PMC 363397...
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https://github.com/charnley/rmsd. Another implementation can be found in SciPy. A free PyMol plugin easily implementing Kabsch is [1]. (This previously linked to...
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Ribbon representation of the atomic structure of Penicillin Binding Protein 3 from Pseudomonas aeruginosa (PDB 3OC2), image created with PyMol....
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81–4. doi:10.1016/0014-5793(88)80176-5. PMID 2971570. S2CID 29141433. Tong PY, Kornfeld S (May 1989). "Ligand interactions of the cation-dependent mannose...
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Gabedit Ghemical Jmol Molekel PyMOL QuteMol RasMol Proprietary Abalone ACD/ChemSketch Atomistix ToolKit ChemDraw ChemWindow EzMol Gaussian Maestro MarvinSketch...
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combine them with contoured shapes from cryo-electron microscopy data. PyMOL, by Warren DeLano, is a popular and flexible molecular graphics program...
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Biochemistry. 42 (10): 2866–73. doi:10.1021/bi0271603. PMID 12627952. The PyMOL Molecular Graphics System, Version 2.0 Schrödinger, LLC. Mews P, Donahue...
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volumetric data. The major packages include: Visual molecular dynamics PyMOL UCSF Chimera Bsoft Coot MOE MTZ (file format) MRC (file format) EZD (file...
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products for traffic and transportation analysis, including PTV VISSIM PyMOL, a popular molecular viewer that embeds Python for scripting and integration...
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Coot CueMol QuteMol Gabedit Materials and Processes Simulations (MAPS) platform Jmol Molden Molekel Open Visualization Tool(OVITO) PyMOL RasMol UGENE VisIt...
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"Accurate modeling of protein conformation by automatic segment matching". J Mol Biol. 226 (2): 507–33. doi:10.1016/0022-2836(92)90964-L. PMID 1640463. Sali...
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doi:10.1038/nature05492. PMID 17187054. S2CID 4394772.; rendered using PyMOL. Wedekind JE, Dance GS, Sowden MP, Smith HC (April 2003). "Messenger RNA...
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biomolecules. Free and open-source software portal Molden Gabedit Molekel PyMol Jmol RasMol SAMSON UCSF Chimera Molecular design software List of quantum chemistry...
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Information Systems, OpenEye Scientific Software, MEDIT, Chemical Computing Group, MolSoft LLC, and the Chemistry Development Kit. A common application of canonical...
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doi:10.1038/nature01780. PMID 12840750. S2CID 2174019.; rendered with PyMOL "troponin" at Dorland's Medical Dictionary "Troponin - Understand the Test...
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doi:10.1126/science.1153803. PMC 4406475. PMID 18388288.; rendered with PyMOL PDB: 1FFK; Ban N, Nissen P, Hansen J, Moore PB, Steitz TA (August 2000)...
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Malaysiana. 49 (3): 517–525. doi:10.17576/jsm-2020-4903-06. MOE BALLView PyMOL VMD Gromacs LAMMPS GAMESS STRIDE Bourne PE, Gu J (2009). Structural Bioinformatics...
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36 (51): 16032–9. doi:10.1021/bi972407v. PMID 9440876.; rendered with PyMOL Barkalow DG, Whistler RL. "Cellulose". AccessScience, McGraw-Hill.[permanent...
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