List of sequenced bacterial genomes

This list of sequenced eubacterial genomes contains most of the eubacteria known to have publicly available complete genome sequences. Most of these sequences have been placed in the International Nucleotide Sequence Database Collaboration, a public database which can be searched[1] on the web. A few of the listed genomes may not be in the INSDC database, but in other public databases[verification needed].

Genomes listed as "Unpublished" are in a database, but not in the peer-reviewed scientific literature.

For the genomes of archaea see list of sequenced archaeal genomes.


Abditibacteriota

[edit]
Species Strain Type Base Pairs Genes Reference GenBank Identifier
Abditibacterium utsteinense LMG 29911 Abditibacteriota 3,606,330 3,240 2018[2] NZ_NIGF00000000.1

Actinomycetota

[edit]
Species Strain Type Base Pairs Genes Reference GenBank Identifier
Corynebacterium diphtheriae C7 (beta) Actinobacteridae 2,499,189 Unpublished CP003210
Corynebacterium diphtheriae PW8 Actinobacteridae 2,530,683 Unpublished CP003216
Bifidobacterium longum NCC2705 Actinobacteria 2,256,640 1,727 2002[3]
Corynebacterium diphtheriae NCTC13129 Actinobacteria 2,488,635 2,320 2003[4]
Corynebacterium efficiens YS314 Actinobacteria 3,147,090 2,942 2003[5]
Corynebacterium glutamicum ATCC13032 Actinobacteria 3,309,401 3,099 Unpublished[1]
Corynebacterium jeikeium K411 Actinobacteria 2,462,499 2,104 2005[6]
Frankia species CcI3 Actinobacteria 5,433,628 4,499 Unpublished[1]
Mycobacterium avium k10 Actinobacteria 4,829,781 4,350 2005[7]
Mycobacterium bovis AF212297 Actinobacteria 4,345,492 3,953 2003[8]
Mycobacterium leprae TN Actinobacteria 3,268,203 2,720 2001[9]
Mycobacterium tuberculosis CDC1551 Actinobacteria 4,403,837 4,189 Unpublished[1]
Mycobacterium tuberculosis H37Rv Actinobacteria 4,411,532 3,999 1998[10]
Nocardia farcinica IFM10152 Actinobacteria 6,021,225 5,683 2004[11]
Streptomyces avermitilis MA4680 Actinobacteria 9,025,608 7,577 2001[12]
Streptomyces coelicolor A3 Actinobacteria 8,667,507 7,825 1996[13]
Symbiobacterium thermophilum Strain Actinobacteria 3,566,135 3,337 2004[14]
Thermobifida fusca YX Actinobacteria 3,642,249 3,110 Unpublished[1]

Aquificota

[edit]
Species Strain Type Base Pairs Genes Reference GenBank Identifier
Aquifex aeolicus VF5 Aquificae 1,551,335 1,522 1998[15] Chromosome NC_000918

Plasmid ece1 NC_001880

Armatimonadota

[edit]

Bacteroidota/Chlorobiota group

[edit]
Species Strain Type Base Pairs Genes Reference GenBank Identifier
Bacteroides fragilis NCTC9343 Bacteroidota 5,205,140 4,260 2005[16] Chromosome CR626927

Plasmid pBF9343 CR626928

Bacteroides fragilis YCH46 Bacteroidota 5,277,274 4,578 2004[17] Chromosome AP006841

Plasmid pBFY46 AP006842

Bacteroides thetaiotaomicron VPI-5482 Bacteroidota 6,260,361 4,778 2003[18] Chromosome AE015928

Plasmid p5482 AY171301

Candidatus Amoebophilus asiaticus 5a2 Bacteroidota 1,884,364 2010[19] CP001102
Chlorobaculum parvum NCIB 8327 Chlorobiota 2,289,249 DOE Joint Genome Institute CP001099
Chlorobium chlorochromatii CaD3 Chlorobiota 2,572,079 2,002 DOE Joint Genome Institute CP000108
Chlorobium ferrooxidans DSM 13031 Chlorobiota DOE Joint Genome Institute AASE00000000
Chlorobium limicola DSM 245 Chlorobiota 2,763,181 DOE Joint Genome Institute NC_010803
Chlorobium phaeobacteroides BS1 Chlorobiota 2,736,403 DOE Joint Genome Institute NC_010831
Chlorobium phaeobacteroides DSM 266 Chlorobiota 3,133,902 DOE Joint Genome Institute NC_008639
Chlorobium phaeovibrioides DSM 265 Chlorobiota 1,966,858 DOE Joint Genome Institute NC_009337
Chlorobium tepidum TLS Chlorobiota 2,154,946 2,255 2002[20] AE006470
Chloroherpeton thalassium ATCC 35110 Chlorobiota 3,293,456 DOE Joint Genome Institute CP001100
Cytophaga hutchinsonii ATCC 33406 Chlorobiota 4,433,218 2007[21] CP000383
Haliscomenobacter hydrossis DSM 1100 Bacteroidota 8,371,686 2011[22] Chromosome CP002691

Plasmid pHALHY01 CP002692
Plasmid pHALHY02 CP002693
Plasmid pHALHY03 CP002694

Ignavibacterium album JCM 16511 Ignavibacteriota 3,658,997 University of Copenhagen CP003418
Pelodictyon luteolum (Chlorobium luteolum) DSM 273 Chlorobiota 2,364,842 2,083 DOE Joint Genome Institute CP000096
Pelodictyon phaeoclathratiforme BU-1 Chlorobiota 3,018,238 DOE Joint Genome Institute CP001110
Porphyromonas gingivalis ATCC 33277 Bacteroidota 2,354,886 2008[23] NC_010729
Porphyromonas gingivalis W83 Bacteroidota 2,343,476 1,909 2003[24] NC_002950
Prosthecochloris aestuarii DSM 271 Chlorobiota 2,512,923 DOE Joint Genome Institute Chromosome CP001108

Plasmid pPAES01 CP001109

Salinibacter ruber DSM 13855 Bacteroidota 3,551,823 2,801 [25] NC_007677
Salinibacter ruber M8 Bacteroidota 3,619,447 [26] Chromosome FP565814

Plasmid pSR11 FP565810
Plasmid pSR56 FP565811
Plasmid pSR61 FP565812
Plasmid pSR84 NC_014157

Saprospira grandis str. Lewin Bacteroidota 4,345,237 University of Hawaii at Manoa Chromosome CP002831

Plasmid CP002832

Caldisericota

[edit]

Chlamydiota/Verrucomicrobiota group

[edit]
Species Strain Type Base Pairs Genes Reference
Akkermansia muciniphila ATCC BAA-835 Verrucomicrobiota 2,664,102 2,176 [27]
Akkermansia muciniphila Urmite Verrucomicrobiota 2,664,714 2,192 [28]
Chlamydia muridarum Nigg Chlamydiota 1,072,950 904 [29]
Chlamydia trachomatis AHAR13 Chlamydiota 1,044,459 911 [30]
Chlamydia trachomatis DUW Chlamydiota 1,042,519 894 [31]
Chlamydophila abortus S26-3 Chlamydiota 1,144,377 961 [32]
Chlamydophila caviae GPIC Chlamydiota 1,173,390 998 [33]
Chlamydophila felis FeC56 Chlamydiota 1,166,239 1,005 [34]
Chlamydophila pneumoniae AR39 Chlamydiota 1,229,853 1,110 [29]
Chlamydophila pneumoniae CWL029 Chlamydiota 1,230,230 1,052 [35]
Chlamydophila pneumoniae J138 Chlamydiota 1,226,565 1,069 [36]
Chlamydophila pneumoniae TW183 Chlamydiota 1,225,935 1,113 ALTANA Pharma
Parachlamy diaspecies UWE25 Chlamydiota 2,414,465 2,031 [37]

Chloroflexota

[edit]
Species Strain Type Base Pairs Genes Reference
Dehalococcoides mccartyi 195 Dehalococcoidetes 1,469,720 1,580 [38]
Dehalococcoides mccartyi CBDB1 Dehalococcoidetes 1,395,502 1,458 [39]
Dehalococcoides mccartyi DCMB5 Dehalococcoidetes 1,431,902 1,526 [40]
Dehalococcoides mccartyi BTF08 Dehalococcoidetes 1,452,335 1,580 [40]

Chrysiogenota

[edit]

Cyanobacteria

[edit]
Species Strain Type Base Pairs Genes Reference
Anabaena nostoc PCC7120 Nostocales 6,413,771 5,368 [41]
Anabaena variabilis ATCC29413 Nostocales 6,365,727 5,039 DOE Joint Genome Institute
Cyanobacteria bacterium YellowstoneA Chroococcales 2,932,766 2,760 [42]
Cyanobacteria bacterium YellowstoneB Chroococcales 3,046,682 2,862 [42]
Gloeobacter violaceus PCC7421 Gloeobacteria 4,659,019 4,430 [43]
Prochlorococcus marinus MED4 Prochlorales 1,657,990 1,716 [44]
Prochlorococcus marinus MIT9312 Prochlorales 1,709,204 1,809 Unpublished[1]
Prochlorococcus marinus MIT9313 Prochlorales 2,410,873 2,273 [44]
Prochlorococcus marinus NATL2A Prochlorales 1,842,899 1,890 Unpublished[1]
Prochlorococcus marinus SS120 Prochlorales 1,751,080 1,882 [45]
Synechococcus elongatus PCC6301 Chroococcales 2,696,255 2,525 Unpublished[1]
Synechococcus elongatus PCC7942 Chroococcales 2,695,903 2,611 Unpublished[1]
Synechococcus species WH8102 Chroococcales 2,434,428 2,526 [46]
Synechococcus species CC9605 Chroococcales 2,510,659 2,638 Unpublished[1]
Synechococcus species CC9902 Chroococcales 2,234,828 2,304 Unpublished[1]
Synechocystis species PCC6803 Chroococcales 3,573,470 3,167 [47]
Thermosynechococcus elongatus bp1 Chroococcales 2,593,857 2,475 Unpublished[1]

Deferribacterota

[edit]
Species Strain Type Base Pairs Genes Reference
Geovibrio sp. Deferribacterota 2,971,658 2,415 DOE Joint Genome Institute
Mucispirillum schaedleri ASF457 Deferribacterota 2,319,180 2,144 Broad Institute
Denitrovibrio acetiphilus DSM 12809 Deferribacterota 3,222,077 3,068 [48]
Calditerrivibrio nitroreducens DSM 19672 Deferribacterota 2,157,835 2,117 [49]
Deferribacter desulfuricans SSM1 Deferribacterota 2,234,389 2,184 [50]
Flexistipes sinusarabici DSM 4947 Deferribacterota 2,526,590 2,397 [51]

Deinococcota

[edit]
Species Strain Type Base Pairs Genes Reference GenBank Identifier
Deinococcus deserti VCD115 Deinococcales 2,819,842 [52] Chromosome NC_012526

Plasmid 1 NC_012528
Plasmid 2 NC_012529
Plasmid 3 NC_012528

Deinococcus geothermalis DSM 11300 Deinococcales 2,467,205 2,335 DOE Joint Genome Institute Chromosome CP000359

Plasmid pDGEO01 CP000358
Plasmid pDGEO02 CP000856

Deinococcus gobiensis I-0 Deinococcales 3,137,147 [53] Chromosome CP002191

Plasmid P1 CP002192
Plasmid P2 CP002193
Plasmid P3 CP002194
Plasmid P4 CP002195
Plasmid P5 CP002196
Plasmid P6 CP002197

Deinococcus maricopensis DSM 21211 Deinococcales 3,498,530 US DOE Joint Genome Institute CP002454
Deinococcus proteolyticus MRP Deinococcales 2,147,060 US DOE Joint Genome Institute Chromosome CP002536

Plasmid pDEIPR01 CP002537
Plasmid pDEIPR02 CP002538
Plasmid pDEIPR03 CP002539
Plasmid pDEIPR04 CP002540

Deinococcus radiodurans R1 Deinococcales Chromosome 1: 2,648,638

Chromosome 2: 412,348

Chromosome 1: 2,579

Chromosome 2: 357

[54] Chromosome 1 NC_001263

Chromosome 2 NC_001264
Plasmid CP1 NC_000959
Plasmid MP1 NC_000958

Marinithermus hydrothermalis DSM 14884 Thermales 2,269,167 DOE Joint Genome Institute CP002630
Meiothermus ruber DSM 1279 Thermales 3,097,457 DOE Joint Genome Institute CP001743
Meiothermus silvanus DSM 9946 Thermales 3,249,394 [55] Chromosome CP002042

Plasmid pMESIL01 CP002043
Plasmid pMESIL02 CP002044

Oceanithermus profundus DSM 14977 Thermales 2,303,940 DOE Joint Genome Institute Chromosome CP002361

Plasmid pOCEPR01

Thermus scotoductus SA-01 Thermales 2,346,803 [56] Chromosome CP001962

Plasmid pTSC8 CP001963

Thermus species CCB_US3_UF1 Thermales 2,243,772 Universiti Sains Malaysia Chromosome CP003126

Plasmid pTCCB09 CP003127

Thermus thermophilus HB27 Thermales 1,894,877 1,982 [57] Chromosome AE017221

Plasmid pTT27 AE017222

Thermus thermophilus HB8 Thermales 1,849,742 1,973 Nara Institute of Science and Technology Chromosome NC_006461

Plasmid pTT27 NC_006462
Plasmid pTT8 NC_006463

Thermus thermophilus JL-18 Thermales 1,902,595 DOE Joint Genome Institute Chromosome CP003252

Plasmid pTTJL1801 CP003253
Plasmid pTTJL1802 CP003254

Thermus thermophilus SG0.5JP17-16 Thermales 1,863,201 DOE Joint Genome Institute Chromosome CP002777

Plasmid pTHTHE1601 CP002778

Truepera radiovictrix DSM 17093 Deinococcales 3,260,398 DOE Joint Genome Institute CP002049

Dictyoglomota

[edit]

Elusimicrobiota

[edit]

Fibrobacterota/Acidobacteriota group

[edit]
Species Strain Type Base Pairs Genes Reference
Acidobacteria bacterium Ellin345 Acidobacteriota 5,650,368 4,777 Unpublished[1]
Leifsonia xyli CTCB07 Acidobacteriota 2,584,158 2,030 [58]
Propionibacterium acnes KPA171202 Acidobacteriota 2,560,265 2,297 [59]
Rubrobacter xylanophilus DSM9941 Acidobacteriota 3,225,748 3,140 DOE Joint Genome Institute
Tropheryma whippelii TW08/27 Acidobacteriota 925,938 784 [60]
Tropheryma whippelii Twist Acidobacteriota 927,303 808 [61]

Bacillota

[edit]
Species Strain Type Base Pairs Genes Reference
Bacillus anthracis Ames Bacilli 5,227,293 5,311 [62]
Bacillus anthracis Sterne Bacilli 5,228,663 5,287 Unpublished[1]
Bacillus cereus ATCC10987 Bacilli 5,224,283 5,603 [63]
Bacillus cereus ATCC14579 Bacilli 5,411,809 5,234 [64]
Bacillus cereus ZK Bacilli 5,300,915 5,134 Unpublished[1]
Bacillus clausii KSMK16 Bacilli 4,303,871 4,108 [65]
Bacillus halodurans C125 Bacilli 4,202,352 4,066 [66]
Bacillus licheniformis ATCC14580 Bacilli 4,222,334 4,152 [67]
Bacillus licheniformis Unspecified Bacilli 4,222,645 4,196 [68]
Bacillus licheniformis DSM13 Bacilli 4,222,645 4,196 [68]
Bacillus subtilis 168 Bacilli 4,214,630 4,106 [69]
Bacillus thuringiensis 9727 Bacilli 5,237,682 5,117 [70]
Carboxydothermus hydrogenoformans Z2901 Clostridia 2,401,520 2,620 [71]
Clostridium acetobutylicum ATCC824 Clostridia 3,940,880 3,672 [72]
Clostridioides difficile QCD-32g58 Clostridia 3,840,681 Unpublished[1]
Clostridium perfringens 13 Clostridia 3,031,430 2,660 [73]
Clostridium tetani E88 Clostridia 2,799,251 2,373 [74]
Desulfitobacterium hafniense Y51 Clostridia 5,727,534 5,060 [75]
Enterococcus faecalis V583 Bacilli 3,218,031 3,113 [76]
Geobacillus kaustophilus HTA426 Bacilli 3,544,776 3,498 [77]
Lactobacillus acetotolerans NCFM Bacilli
Lactobacillus acidophilus NCFM Bacilli 1,993,564 1,864 [78]
Lactobacillus delbrueckii bulgaricus Bacilli 1,864,998 2,096 Unpublished[1]
Lactobacillus johnsonii NCC533 Bacilli 1,992,676 1,821 [79]
Lactobacillus plantarum WCFS1 Bacilli 3,308,274 3,051 [79]
Lactobacillus sakei 23K Bacilli 1,884,661 1,885 Unpublished[1]
Lactobacillus sakei sakei23K Bacilli 1,884,661 1,885 Unpublished[1]
Lactobacillus salivarius UCC118 Bacilli 1,827,111 1,717 Unpublished[1]
Lactococcus lactis IL1403 Bacilli 2,365,589 2,266 [80]
Listeria innocua Clip11262 Bacilli 3,011,208 2,981 [81]
Listeria monocytogenes EGD Bacilli 2,944,528 2,855 [81]
Listeria monocytogenes 4b Bacilli 2,905,187 2,821 [82]
Moorella thermoacetica ATCC39073 Clostridia 2,628,784 2,465 Unpublished[1]
Oceanobacillus iheyensis HTE831 Bacilli 3,630,528 3,496 [83]
Staphylococcus aureus COL Bacilli 2,809,422 2,673 [84]
Staphylococcus aureus MRSA252 Bacilli 2,902,619 2,744 [85]
Staphylococcus aureus MSSA476 Bacilli 2,799,802 2,619 [85]
Staphylococcus aureus Mu50 Bacilli 2,878,529 2,699 [86]
Staphylococcus aureus MW2 Bacilli 2,820,462 2,632 [87]
Staphylococcus aureus N315 Bacilli 2,814,816 2,593 [86]
Staphylococcus aureus NCTC8325 Bacilli 2,821,361 2,892 Unpublished[1]
Staphylococcus aureus RF122 Bacilli 2,742,531 2,589 Unpublished[1]
Staphylococcus aureus USA300 Bacilli 2,872,769 2,560 [88]
Staphylococcus epidermidis ATCC12228 Bacilli 2,499,279 2,419 Unpublished[1]
Staphylococcus epidermidis RP62A Bacilli 2,616,530 2,494 [84]
Staphylococcus haemolyticus JCSC1435 Bacilli 2,685,015 2,678 [89]
Staphylococcus saprophyticus saprophyticus Bacilli 2,516,575 2,446 [90]
Streptococcus agalactiae A909 Bacilli 2,127,839 1,996 [91]
Streptococcus agalactiae NEM316 Bacilli 2,211,485 2,134 [92]
Streptococcus agalactiae 2603 V/R Bacilli 2,160,267 2,124 [93]
Streptococcus mutans UAB159 Bacilli 2,030,921 1,960 [94]
Streptococcus pneumoniae R6 Bacilli 2,038,615 2,043 [95]
Streptococcus pneumoniae TIGR4 Bacilli 2,160,842 2,125 [96]
Streptococcus pyogenes M5Manfredo Bacilli 1,841,271 Unpublished[1]
Streptococcus pyogenes MGAS10270 Bacilli 1,928,252 1,987 [97]
Streptococcus pyogenes MGAS10394 Bacilli 1,899,877 1,886 [98]
Streptococcus pyogenes MGAS10750 Bacilli 1,937,111 1,979 [97]
Streptococcus pyogenes MGAS2096 Bacilli 1,860,355 1,898 [97]
Streptococcus pyogenes MGAS315 Bacilli 1,900,521 1,865 [99]
Streptococcus pyogenes MGAS5005 Bacilli 1,838,554 1,865 [100]
Streptococcus pyogenes MGAS6180 Bacilli 1,897,573 1,894 [101]
Streptococcus pyogenes MGAS8232 Bacilli 1,895,017 1,845 [102]
Streptococcus pyogenes MGAS9429 Bacilli 1,836,467 1,877 [97]
Streptococcus pyogenes SF370 Bacilli 1,852,441 1,696 [103]
Streptococcus pyogenes SSI1 Bacilli 1,894,275 1,861 [104]
Streptococcus thermophilus CNRZ1066 Bacilli 1,796,226 1,915 [105]
Streptococcus thermophilus LMG18311 Bacilli 1,796,846 1,889 [105]
Thermoanaerobacter tengcongensis MB4T Clostridia 2,689,445 2,588 Unpublished[1]

Fusobacteriota

[edit]
Species Strain Type Base Pairs Genes Reference GenBank Identifier
Fusobacterium nucleatum ATCC25586 Fusobacteria 2,174,500 2,067 [106]
Fusobacterium sp. 11_3_2 Fusobacteria Unpublished ACUO00000000
Fusobacterium sp. 21_1A Fusobacteria Unpublished ADEE00000000

Gemmatimonadota

[edit]

Nitrospirota

[edit]

Planctomycetota

[edit]
Species Strain Type Base Pairs Genes Reference
Rhodopirellula baltica strain1 Planctomycetes Planctomycetacia 7,145,576 7,325 Unpublished[1]

Pseudomonadota

[edit]

Alphaproteobacteria

[edit]
Species Strain Type Base Pairs Genes Reference
Agrobacterium tumefaciens C58 Alphaproteobacteria 2,841,581 2,722 [107]
Anaplasma marginale StMaries Alphaproteobacteria 1,197,687 949 [108]
Anaplasma phagocytophilum HZ Alphaproteobacteria 1,471,282 1,264 [109]
Bartonella henselae Houston-1 Alphaproteobacteria 1,931,047 1,612 [110]
Bartonella quintana Toulouse Alphaproteobacteria 1,581,384 1,308 [110]
Bradyrhizobium japonicum USDA110 Alphaproteobacteria 9,105,828 8,317 [111]
Brucella abortus 2308 (chromosome I) Alphaproteobacteria 1,156,948 1,164 [112]
2308 (chromosome II) Alphaproteobacteria 2,121,359 2,186 [112]
Brucella abortus 9-941 (chromosome I) Alphaproteobacteria 2,124,241 2,030 [113]
9-941 (chromosome II) Alphaproteobacteria 1,162,204 1,055 [113]
Brucella melitensis 16M (chromosome I) Alphaproteobacteria 2,117,144 2,059 [114]
16M (chromosome II) Alphaproteobacteria 1,177,787 1,139 [114]
Brucella suis 1330 (chromosome I) Alphaproteobacteria 2,107,794 2,123 [115]
1330 (chromosome II) Alphaproteobacteria 1,207,381 1,150 [115]
Caulobacter crescentus CB15 Alphaproteobacteria 4,016,947 3,737 [116]
Ehrlichia canis Jake Alphaproteobacteria 1,315,030 925 Unpublished[1]
Ehrlichia chaffeensis Arkansas Alphaproteobacteria 1,176,248 1,105 [109]
Ehrlichia ruminantium Gardel Alphaproteobacteria 1,499,920 950 Unpublished[1]
Ehrlichia ruminantium Welgevonden Alphaproteobacteria 1,512,977 958 Unpublished[1]
Unspecified Unspecified Alphaproteobacteria 1,516,355 920 [117]
Erythrobacter litoralis HTCC2594 Alphaproteobacteria 3,052,398 3,011 Unpublished[1]
Gluconobacter oxydans 621H Alphaproteobacteria 2,702,173 2,432 [118]
Jannaschia species CCS1 Alphaproteobacteria 4,317,977 4,212 Unpublished[1]
Magnetospirillum magneticum AMB1 Alphaproteobacteria 4,967,148 4,559 [119]
Mesorhizobium loti MAFF303099 Alphaproteobacteria 7,036,071 6,752 [120]
Neorickettsia sennetsu Miyayama Alphaproteobacteria 859,006 932 [109]
Nitrobacter hamburgensis X14 Alphaproteobacteria 4,406,967 3,804 Unpublished[1]
Nitrobacter winogradskyi Nb255 Alphaproteobacteria 3,402,093 3,122 Unpublished[1]
Novosphingobium aromaticivorans DSM12444 Alphaproteobacteria 3,561,584 3,324 Unpublished[1]
Pelagibacter ubique HTCC1062 Alphaproteobacteria 1,308,759 1,354 [121]
Rhizobium etli CFN42 Alphaproteobacteria 4,381,608 4,067 [122]
Rhizobium leguminosarum viciae3841 Alphaproteobacteria 7,751,309 4,746 Unpublished[1]
Rhodobacter sphaeroides 2.4.1 Alphaproteobacteria 3,188,609 3,022 Unpublished[1]
Unspecified Unspecified Alphaproteobacteria 943,016 835 Unpublished[1]
Rhodopseudomonas palustris BisB18 Alphaproteobacteria 5,513,844 4,886 Unpublished[1]
Rhodopseudomonas palustris BisB5 Alphaproteobacteria 4,892,717 4,397 Unpublished[1]
Rhodopseudomonas palustris CGA009 Alphaproteobacteria 5,459,213 4,833 [123]
Rhodopseudomonas palustris HaA2 Alphaproteobacteria 5,331,656 4,683 Unpublished[1]
Rhodospirillum rubrum ATCC11170 Alphaproteobacteria 4,352,825 3,791 Unpublished[1]
Rickettsia bellii RML369-C Alphaproteobacteria 1,522,076 1,429 Unpublished[1]
Rickettsia conorii Malish7 Alphaproteobacteria 1,268,755 1,374 [124]
Rickettsia felis URRWXCal2 Alphaproteobacteria 1,485,148 1,400 [125]
Rickettsia prowazekii Madrid-E Alphaproteobacteria 1,111,523 834 [126]
Rickettsia typhi Wilmington Alphaproteobacteria 1,111,496 838 [127]
Silicibacter pomeroyi DSS3 Alphaproteobacteria 4,109,442 3,810 [128]
Silicibacter species TM1040 Alphaproteobacteria 3,200,938 3,030 Unpublished[1]
Sinorhizobium medicae WSM419 Alphaproteobacteria 3,781,904 3,635 [129]
Sinorhizobium meliloti Rm1021 Alphaproteobacteria 3,654,135 3,341 [130]
Sphingopyxis alaskensis RB2256 Alphaproteobacteria 3,345,170 3,165 Unpublished[1]
Wolbachia endosymbiont TRS Alphaproteobacteria 1,080,084 805 [131]
Wolbachia pipientis wMel Alphaproteobacteria 1,267,782 1,195 [132]
Zymomonas mobilis ZM4 Alphaproteobacteria 2,056,416 1,998 [133]

Betaproteobacteria

[edit]
Species Strain Type Base Pairs Genes Reference
Azoarcus sp. EbN1 Betaproteobacteria 4,296,230 4,128 2002[134]
Bordetella bronchiseptica RB50 Betaproteobacteria 5,339,179 5,006 Unpublished[1]
Bordetella parapertussis 12822 Betaproteobacteria 4,773,551 4,402 Unpublished[1]
Bordetella pertussis TohamaI Betaproteobacteria 4,086,189 3,806 Unpublished[1]
Burkholderia cenocepacia AU1054 Betaproteobacteria 3,294,563 2,965 Unpublished[1]
Unspecified Unspecified Betaproteobacteria 2,788,459 2,472 Unpublished[1]
Unspecified Unspecified Betaproteobacteria 1,196,094 1,040 Unpublished[1]
Burkholderia mallei ATCC23344 Betaproteobacteria 3,510,148 2,996 Unpublished[1]
Unspecified Unspecified Betaproteobacteria 2,325,379 2,029 2004[135]
Burkholderia pseudomallei 1710b Betaproteobacteria 4,126,292 3,736 Unpublished[1]
Unspecified Unspecified Betaproteobacteria 3,181,762 2,611 Unpublished[1]
Burkholderia pseudomallei K96243 Betaproteobacteria 4,074,542 (chromosome I)
3,173,005 (chromosome II) 		3,460 (chromosome I)
2,395 (chromosome II) 		2004[85]
Burkholderia species 383 Betaproteobacteria 3,694,126 3,334 Unpublished[1]
Unspecified Unspecified Betaproteobacteria 3,587,082 3,174 Unpublished[1]
Unspecified Unspecified Betaproteobacteria 1,395,069 1,209 Unpublished[1]
Burkholderia thailandensis E264 Betaproteobacteria 3,809,201 3,276 2005[136]
Unspecified Unspecified Betaproteobacteria 2,914,771 2,358 2005[136]
Burkholderia xenovorans LB400 Betaproteobacteria 4,895,836 4,430 Unpublished[1]
Unspecified Unspecified Betaproteobacteria 3,363,523 2,960 Unpublished[1]
Unspecified Unspecified Betaproteobacteria 1,471,779 1,312 Unpublished[1]
Chromobacterium violaceum ATCC12472 Betaproteobacteria 4,751,080 4,407 2003[137]
Dechloromonas aromatica RCB Betaproteobacteria 4,501,104 4,171 Unpublished[1]
Methylobacillus flagellatus KT Betaproteobacteria 2,971,517 2,753 Unpublished[1]
Neisseria gonorrhoeae FA1090 Betaproteobacteria 2,153,922 2,002 Unpublished[1]
Neisseria meningitidis serogroup A strain Z2491 Betaproteobacteria 2,184,406 2,121 2000[138]
Neisseria meningitidis serogroup B strain MC58 Betaproteobacteria 2,272,360 2,063 2000[139]
Nitrosomonas europaea Schmidt Betaproteobacteria 2,812,094 2,574 2003[140]
Nitrosospira multiformis ATCC25196 Betaproteobacteria 3,184,243 2,757 Unpublished[1]
Polaromonas species JS666 Betaproteobacteria 5,200,264 4,817 Unpublished[1]
Ralstonia eutropha JMP134 Betaproteobacteria 3,806,533 3,439 Unpublished[1]
Unspecified Unspecified Betaproteobacteria 2,726,152 2,407 Unpublished[1]
Ralstonia metallidurans CH34 Betaproteobacteria 3,928,089 3,601 Unpublished[1]
Unspecified Unspecified Betaproteobacteria 2,580,084 2,313 Unpublished[1]
Ralstonia solanacearum GMI1000 Betaproteobacteria 3,716,413 3,441 2002[141]
Unspecified Unspecified Betaproteobacteria 2,094,509 1,679 [141]
Rhodoferax ferrireducens DSM15236 Betaproteobacteria 4,712,337 4,170 Unpublished[1]
Thiobacillus denitrificans ATCC25259 Betaproteobacteria 2,909,809 2,827 Unpublished[1]

Gammaproteobacteria

[edit]
Species Strain Type Base Pairs Genes Reference
Acinetobacter sp. ADP1 Gammaproteobacteria 3,598,621 3,325 2004[142]
Baumannia cicadellinicola Hc Gammaproteobacteria 686,194 595 Unpublished[1]
Blochmannia floridanus Strain Gammaproteobacteria 705,557 589 2003[143]
Blochmannia pennsylvanicus bpEN Gammaproteobacteria 791,654 610 2005[144]
Buchnera aphidicola APS Gammaproteobacteria 640,681 564 2000[145]
Buchnera aphidicola B Gammaproteobacteria 615,980 504 2003[146]
Buchnera aphidicola Sg Gammaproteobacteria 641,454 545 2002[147]
Carsonella ruddii PV Gammaproteobacteria 159,662 182 2006[148]
Chromohalobacter salexigens DSM3043 Gammaproteobacteria 3,696,649 3,298 Unpublished[1]
Colwellia psychrerythraea 34H Gammaproteobacteria 5,373,180 4,910 Unpublished[1]
Coxiella burnetii RSA493 Gammaproteobacteria 1,995,281 2,016 2003[149]
Erwinia carotovora SCRI1043 Gammaproteobacteria 5,064,019 4,492 Unpublished[1]
Escherichia coli 536 Gammaproteobacteria 4,938,920 4,685 Unpublished[1]
Escherichia coli CFT073 Gammaproteobacteria 5,231,428 5,379 2002[150]
Escherichia coli K-12 Gammaproteobacteria 4,639,675 (4,646,332) 4,331 (4,337) 1997,[151] 2005[152]
Escherichia coli O157:H7 Gammaproteobacteria 5,528,445 (5,498,450) 5,349 (5,361) 2001,[153] 1999[154]
Escherichia coli UTI89 Gammaproteobacteria 5,065,741 5,066 Unpublished[1]
Francisella tularensis LVS Gammaproteobacteria 1,895,994 1,967 Unpublished[1]
Francisella tularensis SCHUS4 Gammaproteobacteria 1,892,819 1,804 2005[155]
Haemophilus ducreyi 3500HP Gammaproteobacteria 1,698,955 1,717 Unpublished[1]
Haemophilus influenzae 86-028NP Gammaproteobacteria 1,913,428 1,792 2005[156]
Haemophilus influenzae Rd Gammaproteobacteria 1,830,138 1,709 1995[157]
Hahella chejuensis KCTC2396 Gammaproteobacteria 7,215,267 6,782 2005[158]
Idiomarina loihiensis L2TR Gammaproteobacteria 2,839,318 2,628 2004[159]
Legionella pneumophila Lens Gammaproteobacteria 3,345,687 2,947 2004[160]
Legionella pneumophila Paris Gammaproteobacteria 3,503,610 3,082 2004[160]
Legionella pneumophila Philadelphia1 Gammaproteobacteria 3,397,754 2,942 Unpublished[1]
Mannheimia succiniciproducens MBEL55E Gammaproteobacteria 2,314,078 2,384 Unpublished[1]
Methylococcus capsulatus Bath Gammaproteobacteria 3,304,561 2,960 2004[161]
Nitrosococcus oceani ATCC19707 Gammaproteobacteria 3,481,691 2,976 Unpublished[1]
Pasteurella multocida Pm70 Gammaproteobacteria 2,257,487 2,014 2001[162]
Photobacterium profundum SS9 Gammaproteobacteria 4,085,304 3,416 Unpublished[1]
Unspecified Unspecified Gammaproteobacteria 2,237,943 1,997 Unpublished[1]
Photorhabdus luminescens laumondiiTTO1 Gammaproteobacteria 5,688,987 4,905 Unpublished[1]
Pseudoalteromonas haloplanktis TAC125 Gammaproteobacteria 3,214,944 2,941 2005[163]
Unspecified Unspecified Gammaproteobacteria 635,328 546 [163]
Pseudomonas aeruginosa VRFPA04 Gammaproteobacteria 6,818,030 5,939 2016[164]
Pseudomonas entomophila L48 Gammaproteobacteria 5,888,780 5,168 Unpublished[1]
Pseudomonas fluorescens Pf-5 Gammaproteobacteria 7,074,893 6,137 2005[165]
Pseudomonas fluorescens PfO-1 Gammaproteobacteria 6,438,405 5,736 Unpublished[1]
Pseudomonas putida KT2440 Gammaproteobacteria 6,181,863 5,350 2002[166]
Pseudomonas syringae B728a Gammaproteobacteria 6,093,698 5,136 2005[167]
Pseudomonas syringae DC3000 Gammaproteobacteria 6,397,126 5,470 2003[168]
Pseudomonas syringae phaseolicola1448A Gammaproteobacteria 5,928,787 4,983 Unpublished[1]
Psychrobacter arcticum 273-4 Gammaproteobacteria 2,650,701 2,147 Unpublished[1]
Psychrobacter cryohalolentis K5 Gammaproteobacteria ~3.1Mb 2,575 [169]
Unspecified Unspecified Gammaproteobacteria 3,059,876 2,467 Unpublished[1]
Saccharophagus degradans Feb-40 Gammaproteobacteria 5,057,531 4,008 Unpublished[1]
Salmonella enterica ATCC9150 Gammaproteobacteria 4,585,229 4,093 2004[170]
Salmonella enterica SCB67 Gammaproteobacteria 4,755,700 4,445 2005[171]
Salmonella enterica Ty2 Gammaproteobacteria 4,791,961 4,323 2003[172]
Salmonella enterica typhiCT18 Gammaproteobacteria 4,809,037 4,600 2001[173]
Salmonella typhimurium LT2 Gammaproteobacteria 4,857,432 4,452 2001[174]
Shewanella denitrificans OS217 Gammaproteobacteria 4,545,906 3,754 Unpublished[1]
Shewanella oneidensis MR1 Gammaproteobacteria 4,969,803 4,630 2002[175]
Shigella boydii Sb227 Gammaproteobacteria 4,519,823 4,142 2005[176]
Shigella dysenteriae Sd197 Gammaproteobacteria 4,369,232 4,277 2005[176]
Shigella flexneri 2457T Gammaproteobacteria 4,599,354 4,073 2003[177]
Shigella flexneri 2a301 Gammaproteobacteria 4,607,203 4,436 2002[178]
Shigella sonnei Ss046 Gammaproteobacteria 4,825,265 4,224 2005[176]
Sodalis glossinidius morsitans Gammaproteobacteria 4,171,146 2,432 2006[179]
Thiomicrospira crunogena XCL2 Gammaproteobacteria 2,427,734 2,192 Unpublished[1]
Vibrio cholerae N16961 Gammaproteobacteria 2,961,149 (chromosome I)
1,072,315 (chromosome II) 		2,736 (chromosome I)
1,092 (chromosome II) 		2000[180]
Vibrio fischeri ES114 Gammaproteobacteria 2,906,179 (chromosome I)
1,332,022 (chromosome II) 		2,575 (chromosome I)
1,172 (chromosome II) 		2005[181]
Vibrio parahaemolyticus RIMD2210633 Gammaproteobacteria 3,288,558 (chromosome I)
1,877,212 (chromosome II) 		3,080 (chromosome I)
1,752 (chromosome II) 		2000[182]
Vibrio vulnificus CMCP6 Gammaproteobacteria 3,281,944 (chromosome I)
1,844,853 (chromosome II) 		2,973 (chromosome I)
1,565 (chromosome II) 		2003[183]
Vibrio vulnificus YJ016 Gammaproteobacteria 3,354,505 (chromosome I)
1,857,073 (chromosome II) 		3,262 (chromosome I)
1,697 (chromosome II) 		2003[184]
Wigglesworthia glossinidia Strain Gammaproteobacteria 697,724 611 2002[185]
Xanthomonas axonopodis citri306 Gammaproteobacteria 5,175,554 4,312 2002[186]
Xanthomonas campestris 8004 Gammaproteobacteria 5,148,708 4,273 2005[187]
Xanthomonas campestris 8510 Gammaproteobacteria 5,178,466 4,487 2005[188]
Xanthomonas campestris ATCC33913 Gammaproteobacteria 5,076,188 4,181 2002[186]
Xanthomonas oryzae KACC10331 Gammaproteobacteria 4,941,439 4,637 2005[189]
Xanthomonas oryzae MAFF311018 Gammaproteobacteria 4,940,217 4,372 Unpublished[1]
Xylella fastidiosa 9a5c Gammaproteobacteria 2,679,306 2,766 2000[190]
Xylella fastidiosa Temecula1 Gammaproteobacteria 2,519,802 2,034 2003[191]
Yersinia pestis Antiqua Gammaproteobacteria 4,702,289 4,167 2006[192]
Yersinia pestis CO-92BiovarOrientalis Gammaproteobacteria 4,653,728 4,008 2001[193]
Yersinia pestis KIM Gammaproteobacteria 4,600,755 4,090 2002[194]
Yersinia pestis Mediaevalis Gammaproteobacteria 4,595,065 3,895 2004[195]
Yersinia pseudotuberculosis IP32953 Gammaproteobacteria 4,744,671 3,974 2004[196]

Zetaproteobacteria

[edit]

Myxococcota–Campylobacterota

[edit]
Species Strain Type Base Pairs Genes Reference
Anaeromyxobacter dehalogenans 2CP-C delta-epsilon 5,013,479 4,346 Unpublished[1]
Bdellovibrio bacteriovorus HD100 delta-epsilon 3,782,950 3,583 2004[197]
Campylobacter jejuni NCTC11168 delta-epsilon 1,641,481 1,643 2000[198]
Campylobacter jejuni RM1221 delta-epsilon 1,777,831 1,838 2005[199]
Desulfotalea psychrophila LSv54 delta-epsilon 3,523,383 3,118 Unpublished[1]
Desulfovibrio desulfuricans G20 delta-epsilon 3,730,232 3,775 Unpublished[1]
Desulfovibrio vulgaris Hildenborough delta-epsilon 3,570,858 3,379 2004[200]
Geobacter metallireducens GS15 delta-epsilon 3,997,420 3,519 Unpublished[1]
Geobacter sulfurreducens PCA delta-epsilon 3,814,139 3,447 2003[201]
Helicobacter hepaticus ATCC51449 delta-epsilon 1,799,146 1,875 2003[202]
Helicobacter pylori 26695 delta-epsilon 1,667,867 1,566 1997[203]
Helicobacter pylori HPAG1 delta-epsilon 1,596,366 1,536 Unpublished[1]
Helicobacter pylori J99 delta-epsilon 1,643,831 1,491 1999[204]
Lawsonia intracellularis PHEMN1-00 delta-epsilon 1,719,014 1,344 Unpublished[1]
Lawsonia intracellularis PHE/MN1-00 delta-epsilon 1,457,619 (chromosome)
27,048 (plasmid A)
39,794 (plasmid B)
194,553 (plasmid C) 		1,187
29 (plasmid A)
24 (plasmid B)
104 (plasmid C) 		2013[205]
Myxococcus xanthus DK1622 delta-epsilon 9,139,763 7,331 Unpublished[1]
Pelobacter carbinolicus DSM2380 delta-epsilon 3,665,893 3,119 Unpublished[1]
Sorangium cellulosum So ce56 delta-epsilon 13,033,779 9,367 2007[206]
Sulfurimonas denitrificans DSM1251 delta-epsilon 2,201,561 2,104 2007[207]
Syntrophus aciditrophicus SB delta-epsilon 3,179,300 3,168 Unpublished[1]
Thiomicrospira denitrificans ATCC33889 delta-epsilon 2,201,561 2,097 Unpublished[1]
Wolinella succino DSMZ1740 delta-epsilon 2,110,355 2,044 2003[208]

Spirochaetota

[edit]
Species Strain Type Base Pairs Genes Reference
Borrelia burgdorferi B31 Spirochaetota 910,724 850 [209]
Borrelia garinii PBi Spirochaetota 904,246 832 [210]
Leptospira interrogans 56601 Spirochaetota 4,332,241 4,358 [211]
Unspecified Unspecified Spirochaetota 358,943 367 [211]
Leptospira interrogans FiocruzL1130 Spirochaetota 4,277,185 3,394 [212]
Unspecified Unspecified Spirochaetota 350,181 264 [212]
Treponema denticola ATCC35405 Spirochaetota 2,843,201 2,767 [213]
Treponema pallidum Nichols Spirochaetota 1,138,011 1,031 [214]

Synergistota

[edit]
Species Strain Type Base Pairs Genes Reference GenBank Identifier
Thermovirga lienii Cas60314, DSM 17291 Synergistia 1,967,774 DOE Joint Genome Institute CP003096

Mycoplasmatota

[edit]
Species Strain Type Base Pairs Genes Reference GenBank Identifier
Mesoplasma florum L1 Mollicutes 793,224 683 Unpublished[1]
Mycoplasma anatis 1340, ATCC 25524 Mollicutes [215] AFVJ00000000
Mycoplasma capricolum ATCC273 Mollicutes 1,010,023 812 Unpublished[1]
Mycoplasma gallisepticum R Mollicutes 996,422 726 [216]
Mycoplasma genitalium G37 Mollicutes 580,076 476 [217]
Mycoplasma haemocanis Illinois Mollicutes 919,992 Unpublished CP003199
Mycoplasma hyopneumoniae 232 Mollicutes 892,758 691 [218]
Mycoplasma hyopneumoniae 7448 Mollicutes 920,079 663 [219]
Mycoplasma hyopneumoniae J Mollicutes 897,405 665 [219]
Mycoplasma hyorhinis GDL-1 Mollicutes 837,480 Unpublished CP003231
Mycoplasma leachii 99/014/6 Mollicutes 1,017,232 Unpublished FR668087
Mycoplasma mobile 163K Mollicutes 777,079 635 [220]
Mycoplasma mycoides SC Mollicutes 1,211,703 1,016 [221]
Mycoplasma penetrans HF2 Mollicutes 1,358,633 1,037 [222]
Mycoplasma pneumoniae M129 Mollicutes 816,394 688 [223]
Mycoplasma pulmonis UAB Mollicutes 963,879 782 [224]
Mycoplasma synoviae 53 Mollicutes 799,476 672 [219]
Phytoplas maasteris AYWB Mollicutes 706,569 671 Unpublished[1]
Phytoplas maasteris OY Mollicutes 860,631 754 [225]
Ureaplasma urealyticum serovar3 Mollicutes 751,719 611 [226]

Thermodesulfobacteriota

[edit]
Species Strain Type Base Pairs Genes Reference
Thermodesulfatator indicus CIR29812(T) Thermodesulfobacteriota 2,322,224 2,291 2012[227]
Thermodesulfobacterium geofontis OPF15(T) Thermodesulfobacteriota 1,634,377 1,635 2013[228]

Thermotogota

[edit]
Species Strain Type Base Pairs Genes Reference
Fervidobacterium nodosum Rt17-B1 Thermotogota 1,950,000 1,750 2009[229]
Kosmotoga olearia TBF 19.5.1 Thermotogota 2,302,126 2,118 2011[230]
Mesotoga prima MesG1.Ag.4.2 Thermotogota 2,974,229 chromosome
1,724 plasmid 		2,736 2012[231]
Thermosipho africanus TCF52B Thermotogota 2,016,657 2,000 2009[232]
Thermosipho melanesiensis BI429 Thermotogota 1,920,000 1,879 2009[229]
Thermotoga lettingae TMO Thermotogota 2,140,000 2,040 2009[229]
Thermotoga maritima MSB8 Thermotogota 1,860,725 1,846 1999,[233] 2013[234]
Thermotoga petrophila RKU-1 Thermotogota 1,820,000 1,785 2009[229]

See also

[edit]

References

[edit]
  1. ^ a b c d e f g h i j k l m n o p q r s t u v w x y z aa ab ac ad ae af ag ah ai aj ak al am an ao ap aq ar as at au av aw ax ay az ba bb bc bd be bf bg bh bi bj bk bl bm bn bo bp bq br bs bt bu bv bw bx by bz ca cb cc cd ce cf cg ch ci cj ck cl cm cn co cp cq cr cs ct cu cv cw cx cy cz da db dc "Entrez Genome Database Search". National Center for Biotechnology Information. Search for details on specific genomes by organism name and strain.
  2. ^ Tahon G, et al. (2018). "Abditibacterium utsteinense sp. nov., the first cultivated member of candidate phylum FBP, isolated from ice-free Antarctic soil samples". Syst. Appl. Microbiol. 41 (4): 279–290. Bibcode:2018SyApM..41..279T. doi:10.1016/j.syapm.2018.01.009. PMID 29475572. S2CID 3515091.
  3. ^ Schell MA, et al. (2002). "The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract". Proc. Natl. Acad. Sci. U.S.A. 99 (22): 14422–7. Bibcode:2002PNAS...9914422S. doi:10.1073/pnas.212527599. PMC 137899. PMID 12381787.
  4. ^ Cerdeño-Tárraga AM, et al. (2003). "The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129". Nucleic Acids Res. 31 (22): 6516–23. doi:10.1093/nar/gkg874. PMC 275568. PMID 14602910.
  5. ^ Nishio Y, et al. (2003). "Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens". Genome Res. 13 (7): 1572–9. doi:10.1101/gr.1285603. PMC 403753. PMID 12840036.
  6. ^ Tauch A, et al. (2005). "Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora". J Bacteriol. 187 (13): 4671–82. doi:10.1128/JB.187.13.4671-4682.2005. PMC 1151758. PMID 15968079.
  7. ^ Li L, et al. (2005). "The complete genome sequence of Mycobacterium avium subspecies paratuberculosis". Proc. Natl. Acad. Sci. U.S.A. 102 (35): 12344–9. Bibcode:2005PNAS..10212344L. doi:10.1073/pnas.0505662102. PMC 1194940. PMID 16116077.
  8. ^ Garnier T, et al. (2003). "The complete genome sequence of Mycobacterium bovis". Proc. Natl. Acad. Sci. U.S.A. 100 (13): 7877–82. Bibcode:2003PNAS..100.7877G. doi:10.1073/pnas.1130426100. PMC 164681. PMID 12788972.
  9. ^ Cole ST, et al. (2001). "Massive gene decay in the leprosy bacillus". Nature. 409 (6823): 1007–11. Bibcode:2001Natur.409.1007C. doi:10.1038/35059006. PMID 11234002. S2CID 4307207.
  10. ^ Cole ST, et al. (1998). "Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence". Nature. 393 (6685): 537–44. Bibcode:1998Natur.393..537C. doi:10.1038/31159. PMID 9634230.
  11. ^ Ishikawa J, et al. (2004). "The complete genomic sequence of Nocardia farcinica IFM 10152". Proc. Natl. Acad. Sci. U.S.A. 101 (41): 14925–30. Bibcode:2004PNAS..10114925I. doi:10.1073/pnas.0406410101. PMC 522048. PMID 15466710.
  12. ^ Omura S, et al. (2001). "Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites". Proc. Natl. Acad. Sci. U.S.A. 98 (21): 12215–20. Bibcode:2001PNAS...9812215O. doi:10.1073/pnas.211433198. PMC 59794. PMID 11572948.
  13. ^ Redenbach M, et al. (1996). "A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome". Mol Microbiol. 21 (1): 77–96. doi:10.1046/j.1365-2958.1996.6191336.x. PMID 8843436. S2CID 30241692.
  14. ^ Ueda K, et al. (2004). "Genome sequence of Symbiobacterium thermophilum, an uncultivable bacterium that depends on microbial commensalism". Nucleic Acids Res. 32 (16): 4937–44. doi:10.1093/nar/gkh830. PMC 519118. PMID 15383646.
  15. ^ Deckert G, et al. (1998). "The complete genome of the hyperthermophilic bacterium Aquifex aeolicus". Nature. 392 (6674): 353–8. Bibcode:1998Natur.392..353D. doi:10.1038/32831. PMID 9537320.
  16. ^ Cerdeño-Tárraga AM, et al. (2005). "Extensive DNA inversions in the B. fragilis genome control variable gene expression" (PDF). Science. 307 (5714): 1463–5. Bibcode:2005Sci...307.1463C. doi:10.1126/science.1107008. PMID 15746427. S2CID 43623586.
  17. ^ Kuwahara, T; et al. (2004). "Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation". PNAS. 101 (41): 14919–14924. Bibcode:2004PNAS..10114919K. doi:10.1073/pnas.0404172101. PMC 522005. PMID 15466707.
  18. ^ Xu J, et al. (2003). "A genomic view of the human-Bacteroides thetaiotaomicron symbiosis". Science. 299 (5615): 2074–6. Bibcode:2003Sci...299.2074X. doi:10.1126/science.1080029. PMID 12663928. S2CID 34071235.
  19. ^ Schmitz-Esser, S.; et al. (2010). "The genome of the amoeba symbiont Candidatus Amoebophilus asiaticus reveals common mechanisms for host cell interaction among amoeba-associated bacteria". J. Bacteriol. 192 (4): 1045–1057. doi:10.1128/JB.01379-09. PMC 2812958. PMID 20023027.
  20. ^ Eisen JA, et al. (2002). "The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium". Proc. Natl. Acad. Sci. U.S.A. 99 (14): 9509–14. Bibcode:2002PNAS...99.9509E. doi:10.1073/pnas.132181499. PMC 123171. PMID 12093901.
  21. ^ Xie, G; et al. (June 2007). "Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii". Appl Environ Microbiol. 73 (11): 3536–3546. Bibcode:2007ApEnM..73.3536X. doi:10.1128/AEM.00225-07. PMC 1932680. PMID 17400776.
  22. ^ Daligault, H.; et al. (2011). "Complete genome sequence of Haliscomenobacter hydrossis type strain (O)". Stand Genomic Sci. 4 (3): 352–360. doi:10.4056/sigs.1964579. PMC 3156403. PMID 21886862.
  23. ^ Naito, M; et al. (2008). "Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis". DNA Res. 15 (4): 215–225. doi:10.1093/dnares/dsn013. PMC 2575886. PMID 18524787.
  24. ^ Nelson KE, et al. (2003). "Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83". J Bacteriol. 185 (18): 5591–601. doi:10.1128/JB.185.18.5591-5601.2003. PMC 193775. PMID 12949112.
  25. ^ Mongodin EF, et al. (2005). "The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea". Proc. Natl. Acad. Sci. U.S.A. 102 (50): 18147–52. Bibcode:2005PNAS..10218147M. doi:10.1073/pnas.0509073102. PMC 1312414. PMID 16330755.
  26. ^ Pena, A; et al. (2010). "Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains". ISME J. 4 (7): 882–895. Bibcode:2010ISMEJ...4..882P. doi:10.1038/ismej.2010.6. PMID 20164864.
  27. ^ van Passel, Mark W. J.; Kant, Ravi; Zoetendal, Erwin G.; Plugge, Caroline M.; Derrien, Muriel; Malfatti, Stephanie A.; Chain, Patrick S. G.; Woyke, Tanja; Palva, Airi (2011-01-01). "The genome of Akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes". PLOS ONE. 6 (3): e16876. Bibcode:2011PLoSO...616876V. doi:10.1371/journal.pone.0016876. ISSN 1932-6203. PMC 3048395. PMID 21390229.
  28. ^ Caputo, Aurélia; Dubourg, Grégory; Croce, Olivier; Gupta, Sushim; Robert, Catherine; Papazian, Laurent; Rolain, Jean-Marc; Raoult, Didier (2015-02-19). "Whole-genome assembly of Akkermansia muciniphila sequenced directly from human stool". Biology Direct. 10: 5. doi:10.1186/s13062-015-0041-1. ISSN 1745-6150. PMC 4333879. PMID 25888298.
  29. ^ a b Read TD, et al. (2000). "Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39". Nucleic Acids Res. 28 (6): 1397–406. doi:10.1093/nar/28.6.1397. PMC 111046. PMID 10684935.
  30. ^ Carlson JH, et al. (2005). "Comparative genomic analysis of Chlamydia trachomatis oculotropic and genitotropic strains". Infection and Immunity. 73 (10): 6407–18. doi:10.1128/IAI.73.10.6407-6418.2005. PMC 1230933. PMID 16177312.
  31. ^ Stephens RS, et al. (1998). "Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis". Science. 282 (5389): 754–9. Bibcode:1998Sci...282..754S. doi:10.1126/science.282.5389.754. PMID 9784136.
  32. ^ Thomson NR, et al. (2005). "The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation". Genome Res. 15 (5): 629–40. doi:10.1101/gr.3684805. PMC 1088291. PMID 15837807.
  33. ^ Read TD, et al. (2003). "Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae". Nucleic Acids Res. 31 (8): 2134–47. doi:10.1093/nar/gkg321. PMC 153749. PMID 12682364.
  34. ^ Azuma, Y.; Hirakawa, H.; Yamashita, A.; Cai, Y.; Rahman, MA.; Suzuki, H.; Mitaku, S.; Toh, H.; et al. (Feb 2006). "Genome sequence of the cat pathogen, Chlamydophila felis". DNA Res. 13 (1): 15–23. doi:10.1093/dnares/dsi027. PMID 16766509.
  35. ^ Kalman S, et al. (1999). "Comparative genomes of Chlamydia pneumoniae and C. trachomatis". Nat Genet. 21 (4): 385–9. doi:10.1038/7716. PMID 10192388. S2CID 24629065.
  36. ^ Shirai, M; Hirakawa, H; Ouchi, K; Tabuchi, M; Kishi, F; Kimoto, M; Takeuchi, H; Nishida, J; Shibata, K; Fujinaga, R; Yoneda, H; Matsushima, H; Tanaka, C; Furukawa, S; Miura, K; Nakazawa, A; Ishii, K; Shiba, T; Hattori, M; Kuhara, S; Nakazawa, T (Jun 2000). "Comparison of outer membrane protein genes omp and pmp in the whole genome sequences of Chlamydia pneumoniae isolates from Japan and the United States". J Infect Dis. 181 (Suppl 3): S524–7. doi:10.1086/315616. PMID 10839753.
  37. ^ Horn M, et al. (2004). "Illuminating the evolutionary history of chlamydiae". Science. 304 (5671): 728–30. Bibcode:2004Sci...304..728H. doi:10.1126/science.1096330. PMID 15073324. S2CID 39036549.
  38. ^ Seshadri R, et al. (2005). "Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes". Science. 307 (5706): 105–8. Bibcode:2005Sci...307..105S. doi:10.1126/science.1102226. PMID 15637277. S2CID 15601443.
  39. ^ Kube M, et al. (2005). "Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1". Nat Biotechnol. 23 (10): 1269–73. doi:10.1038/nbt1131. PMID 16116419.
  40. ^ a b Pöritz, M.; Goris, T.; Wubet, T.; Tarkka, MT.; Buscot, F.; Nijenhuis, I.; Lechner, U.; Adrian, L. (Jun 2013). "Genome sequences of two dehalogenation specialists – Dehalococcoides mccartyi strains BTF08 and DCMB5 enriched from the highly polluted Bitterfeld region". FEMS Microbiol Lett. 343 (2): 101–4. doi:10.1111/1574-6968.12160. PMID 23600617.
  41. ^ DNA Res. 2001 Oct 31;8(5):205-13, 8(5):205-13; 227-53
  42. ^ a b Allewalt JP, et al. (2006). "Effect of temperature and light on growth of and photosynthesis by Synechococcus isolates typical of those predominating in the octopus spring microbial mat community of Yellowstone National Park". Appl Environ Microbiol. 72 (1): 544–50. Bibcode:2006ApEnM..72..544A. doi:10.1128/AEM.72.1.544-550.2006. PMC 1352173. PMID 16391090.
  43. ^ Nakamura Y, et al. (2003). "Complete genome structure of Gloeobacter violaceus PCC 7421, a cyanobacterium that lacks thylakoids". DNA Res. 10 (4): 137–45. doi:10.1093/dnares/10.4.137. PMID 14621292.
  44. ^ a b Rocap G, et al. (2003). "Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation". Nature. 424 (6952): 1042–7. Bibcode:2003Natur.424.1042R. doi:10.1038/nature01947. PMID 12917642. S2CID 4344597.
  45. ^ Dufresne A, et al. (2003). "Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome". Proc. Natl. Acad. Sci. U.S.A. 100 (17): 10020–5. Bibcode:2003PNAS..10010020D. doi:10.1073/pnas.1733211100. PMC 187748. PMID 12917486.
  46. ^ Palenik B, et al. (2003). "The genome of a motile marine Synechococcus". Nature. 424 (6952): 1037–42. Bibcode:2003Natur.424.1037P. doi:10.1038/nature01943. PMID 12917641.
  47. ^ Kaneko, T.; et al. (1995). "Sequence Analysis of the Genome of the Unicellular Cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence Features in the 1 Mb Region from Map Positions 64% to 92% of the Genome". DNA Res. 2 (4): 153–66. doi:10.1093/dnares/2.4.153. PMID 8590279.
  48. ^ Kiss, H; Lang, E; Lapidus, A; Copeland, A; Nolan, M; Glavina Del Rio, T; Chen, F; Lucas, S; Tice, H; Cheng, J. F.; Han, C; Goodwin, L; Pitluck, S; Liolios, K; Pati, A; Ivanova, N; Mavromatis, K; Chen, A; Palaniappan, K; Land, M; Hauser, L; Chang, Y. J.; Jeffries, C. D.; Detter, J. C.; Brettin, T; Spring, S; Rohde, M; Göker, M; Woyke, T; et al. (2010). "Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460)". Standards in Genomic Sciences. 2 (3): 270–9. doi:10.4056/sigs.892105. PMC 3035293. PMID 21304711.
  49. ^ Pitluck, S; Sikorski, J; Zeytun, A; Lapidus, A; Nolan, M; Lucas, S; Hammon, N; Deshpande, S; Cheng, J. F.; Tapia, R; Han, C; Goodwin, L; Liolios, K; Pagani, I; Ivanova, N; Mavromatis, K; Pati, A; Chen, A; Palaniappan, K; Hauser, L; Chang, Y. J.; Jeffries, C. D.; Detter, J. C.; Brambilla, E; Djao, O. D.; Rohde, M; Spring, S; Göker, M; Woyke, T; et al. (2011). "Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1)". Standards in Genomic Sciences. 4 (1): 54–62. doi:10.4056/sigs.1523807. PMC 3072091. PMID 21475587.
  50. ^ Takaki, Y; Shimamura, S; Nakagawa, S; Fukuhara, Y; Horikawa, H; Ankai, A; Harada, T; Hosoyama, A; Oguchi, A; Fukui, S; Fujita, N; Takami, H; Takai, K (2010). "Bacterial lifestyle in a deep-sea hydrothermal vent chimney revealed by the genome sequence of the thermophilic bacterium Deferribacter desulfuricans SSM1". DNA Research. 17 (3): 123–37. doi:10.1093/dnares/dsq005. PMC 2885270. PMID 20189949.
  51. ^ Lapidus, A; Chertkov, O; Nolan, M; Lucas, S; Hammon, N; Deshpande, S; Cheng, J. F.; Tapia, R; Han, C; Goodwin, L; Pitluck, S; Liolios, K; Pagani, I; Ivanova, N; Huntemann, M; Mavromatis, K; Mikhailova, N; Pati, A; Chen, A; Palaniappan, K; Land, M; Hauser, L; Brambilla, E. M.; Rohde, M; Abt, B; Spring, S; Göker, M; Bristow, J; Eisen, J. A.; et al. (2011). "Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10)". Standards in Genomic Sciences. 5 (1): 86–96. doi:10.4056/sigs.2235024. PMC 3236037. PMID 22180813.
  52. ^ De Groot, Arjan; et al. (2009). "Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti". PLOS Genet. 5 (3): e1000434. doi:10.1371/journal.pgen.1000434. PMC 2669436. PMID 19370165.
  53. ^ Yuan, M; et al. (2012). "Genome Sequence and Transcriptome Analysis of the Radioresistant Bacterium Deinococcus gobiensis: Insights into the Extreme Environmental Adaptations". PLOS ONE. 7 (3): e34458. Bibcode:2012PLoSO...734458Y. doi:10.1371/journal.pone.0034458. PMC 3314630. PMID 22470573.
  54. ^ White O, et al. (1999). "Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1". Science. 286 (5444): 1571–7. doi:10.1126/science.286.5444.1571. PMC 4147723. PMID 10567266.
  55. ^ Sikorski, J; et al. (2010). "Complete genome sequence of Meiothermus silvanus type strain (VI-R2)". Stand Genomic Sci. 3 (1): 37–46. doi:10.4056/sigs.1042812. PMC 3035272. PMID 21304690.
  56. ^ Gounder, Kamini; et al. (2011). "Sequence of the hyperplastic genome of the naturally competent Thermus scotoductus SA-01". BMC Genomics. 12: 577. doi:10.1186/1471-2164-12-577. PMC 3235269. PMID 22115438.
  57. ^ Henne A, et al. (2004). "The genome sequence of the extreme thermophile Thermus thermophilus". Nat Biotechnol. 22 (5): 547–53. doi:10.1038/nbt956. PMID 15064768. S2CID 25469576.
  58. ^ Monteiro-Vitorello, CB.; Camargo, LE.; Van Sluys, MA.; Kitajima, JP.; Truffi, D.; do Amaral, AM.; Harakava, R.; de Oliveira, JC.; et al. (Aug 2004). "The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli". Mol Plant Microbe Interact. 17 (8): 827–36. doi:10.1094/MPMI.2004.17.8.827. hdl:11449/67815. PMID 15305603.
  59. ^ Liu, J.; Cheng, A.; Bangayan, NJ.; Barnard, E.; Curd, E.; Craft, N.; Li, H. (2014). "Draft Genome Sequences of Propionibacterium acnes Type Strain ATCC6919 and Antibiotic-Resistant Strain HL411PA1". Genome Announc. 2 (4): e00740–14. doi:10.1128/genomeA.00740-14. PMC 4132614. PMID 25125638.
  60. ^ Bentley, SD.; Maiwald, M.; Murphy, LD.; Pallen, MJ.; Yeats, CA.; Dover, LG.; Norbertczak, HT.; Besra, GS.; et al. (Feb 2003). "Sequencing and analysis of the genome of the Whipple's disease bacterium Tropheryma whipplei". Lancet. 361 (9358): 637–44. doi:10.1016/S0140-6736(03)12597-4. PMID 12606174. S2CID 8743326.
  61. ^ Raoult D, et al. (2003). "Tropheryma whipplei Twist: a human pathogenic Actinobacteria with a reduced genome". Genome Res. 13 (8): 1800–9. doi:10.1101/gr.1474603. PMC 403771. PMID 12902375. Retrieved 21 June 2016.
  62. ^ Read TD, et al. (2003). "The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria" (PDF). Nature. 423 (6935): 81–6. Bibcode:2003Natur.423...81R. doi:10.1038/nature01586. PMID 12721629. S2CID 504400.
  63. ^ Rasko DA, et al. (2004). "The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1". Nucleic Acids Res. 32 (3): 977–88. doi:10.1093/nar/gkh258. PMC 373394. PMID 14960714.
  64. ^ Ivanova N, et al. (2003). "Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis". Nature. 423 (6935): 87–91. Bibcode:2003Natur.423...87I. doi:10.1038/nature01582. PMID 12721630.
  65. ^ Kobayashi T, et al. (1995). "Purification and properties of an alkaline protease from alkalophilic Bacillus sp. KSM-K16". Appl Microbiol Biotechnol. 43 (3): 473–81. doi:10.1007/BF00218452. PMID 7632397. S2CID 6077293.
  66. ^ Takami H, et al. (1999). "An improved physical and genetic map of the genome of alkaliphilic Bacillus sp. C-125". Extremophiles. 3 (1): 21–8. doi:10.1007/s007920050095. PMID 10086841. S2CID 1180141.
  67. ^ Rey MW, et al. (2004). "Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species". Genome Biol. 5 (10): R77. doi:10.1186/gb-2004-5-10-r77. PMC 545597. PMID 15461803.
  68. ^ a b Veith B, et al. (2004). "The complete genome sequence of Bacillus licheniformis DSM13, an organism with great industrial potential". J Mol Microbiol Biotechnol. 7 (4): 204–11. doi:10.1159/000079829. PMID 15383718.
  69. ^ Kunst F, et al. (1997). "The complete genome sequence of the gram-positive bacterium Bacillus subtilis". Nature. 390 (6657): 249–56. Bibcode:1997Natur.390..249K. doi:10.1038/36786. PMID 9384377.
  70. ^ Han, CS.; Xie, G.; Challacombe, JF.; Altherr, MR.; Bhotika, SS.; Brown, N.; Bruce, D.; Campbell, CS.; et al. (May 2006). "Pathogenomic sequence analysis of Bacillus cereus and Bacillus thuringiensis isolates closely related to Bacillus anthracis". J Bacteriol. 188 (9): 3382–90. doi:10.1128/JB.188.9.3382-3390.2006. PMC 1447445. PMID 16621833.
  71. ^ Wu, M.; Ren, Q.; Durkin, AS.; Daugherty, SC.; Brinkac, LM.; Dodson, RJ.; Madupu, R.; Sullivan, SA.; et al. (Nov 2005). "Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901". PLOS Genet. 1 (5): e65. doi:10.1371/journal.pgen.0010065. PMC 1287953. PMID 16311624.
  72. ^ Nölling J, et al. (2001). "Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum". J Bacteriol. 183 (16): 4823–38. doi:10.1128/JB.183.16.4823-4838.2001. PMC 99537. PMID 11466286.
  73. ^ Shimizu T, et al. (2002). "Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater". Proc. Natl. Acad. Sci. U.S.A. 99 (2): 996–1001. Bibcode:2002PNAS...99..996S. doi:10.1073/pnas.022493799. PMC 117419. PMID 11792842.
  74. ^ Bruggemann H, et al. (2003). "The genome sequence of Clostridium tetani, the causative agent of tetanus disease". Proc. Natl. Acad. Sci. U.S.A. 100 (3): 1316–21. Bibcode:2003PNAS..100.1316B. doi:10.1073/pnas.0335853100. PMC 298770. PMID 12552129.
  75. ^ Nonaka H, et al. (2006). "Complete genome sequence of the dehalorespiring bacterium Desulfitobacterium hafniense Y51 and comparison with Dehalococcoides ethenogenes 195". J Bacteriol. 188 (6): 2262–74. doi:10.1128/JB.188.6.2262-2274.2006. PMC 1428132. PMID 16513756.
  76. ^ Paulsen IT, et al. (2003). "Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis". Science. 299 (5615): 2071–4. Bibcode:2003Sci...299.2071P. doi:10.1126/science.1080613. PMID 12663927. S2CID 45480495.
  77. ^ Takami H, et al. (2004). "Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus". Nucleic Acids Res. 32 (21): 6292–303. doi:10.1093/nar/gkh970. PMC 535678. PMID 15576355.
  78. ^ Altermann E, et al. (2005). "Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM". Proc. Natl. Acad. Sci. U.S.A. 102 (11): 3906–12. Bibcode:2005PNAS..102.3906A. doi:10.1073/pnas.0409188102. PMC 554803. PMID 15671160.
  79. ^ a b Pridmore RD, et al. (2004). "The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533". Proc. Natl. Acad. Sci. U.S.A. 101 (8): 2512–7. Bibcode:2004PNAS..101.2512P. doi:10.1073/pnas.0307327101. PMC 356981. PMID 14983040.
  80. ^ Bolotin A, et al. (2001). "The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403". Genome Res. 11 (5): 731–53. doi:10.1101/gr.gr-1697r. PMC 311110. PMID 11337471.
  81. ^ a b Glaser P, et al. (2001). "Comparative genomics of Listeria species". Science. 294 (5543): 849–52. Bibcode:1976Sci...192..801S. doi:10.1126/science.1063447. PMID 11679669. S2CID 40718381.
  82. ^ Nelson KE, et al. (2004). "Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species". Nucleic Acids Res. 32 (8): 2386–95. doi:10.1093/nar/gkh562. PMC 419451. PMID 15115801.
  83. ^ Lu, J; Nogi, Y; Takami, H (2001). "Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge". FEMS Microbiol Lett. 205 (2): 291–7. doi:10.1111/j.1574-6968.2001.tb10963.x. PMID 11750818.
  84. ^ a b Gill SR, et al. (2005). "Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain". J Bacteriol. 187 (7): 2426–38. doi:10.1128/JB.187.7.2426-2438.2005. PMC 1065214. PMID 15774886.
  85. ^ a b c Holden MT, et al. (2004). "Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance". Proc. Natl. Acad. Sci. U.S.A. 101 (26): 9786–91. Bibcode:2004PNAS..101.9786H. doi:10.1073/pnas.0402521101. PMC 470752. PMID 15213324.
  86. ^ a b Kuroda M, et al. (2001). "Whole genome sequencing of meticillin-resistant Staphylococcus aureus". Lancet. 357 (9264): 1225–40. doi:10.1016/S0140-6736(00)04403-2. PMID 11418146. S2CID 25076109.
  87. ^ Baba T, et al. (2002). "Genome and virulence determinants of high virulence community-acquired MRSA". Lancet. 359 (9320): 1819–27. doi:10.1016/S0140-6736(02)08713-5. PMID 12044378. S2CID 4657920.
  88. ^ Diep BA, et al. (2006). "Complete genome sequence of USA300, an epidemic clone of community-acquired meticillin-resistant Staphylococcus aureus". Lancet. 367 (9512): 731–9. doi:10.1016/S0140-6736(06)68231-7. PMID 16517273. S2CID 30038673.
  89. ^ Takeuchi F, et al. (2005). "Whole-genome sequencing of Staphylococcus haemolyticus uncovers the extreme plasticity of its genome and the evolution of human-colonizing staphylococcal species". J Bacteriol. 187 (21): 7292–308. doi:10.1128/JB.187.21.7292-7308.2005. PMC 1272970. PMID 16237012.
  90. ^ Kuroda M, et al. (2005). "Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection". Proc. Natl. Acad. Sci. U.S.A. 102 (37): 13272–7. Bibcode:2005PNAS..10213272K. doi:10.1073/pnas.0502950102. PMC 1201578. PMID 16135568.
  91. ^ Tettelin H, et al. (2005). "Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"". Proc. Natl. Acad. Sci. U.S.A. 102 (39): 13950–5. Bibcode:2005PNAS..10213950T. doi:10.1073/pnas.0506758102. PMC 1216834. PMID 16172379.
  92. ^ Glaser P, et al. (2002). "Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease". Mol Microbiol. 45 (6): 1499–513. doi:10.1046/j.1365-2958.2002.03126.x. PMID 12354221. S2CID 25189736.
  93. ^ Tettelin H, et al. (2002). "Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae". Proc. Natl. Acad. Sci. U.S.A. 99 (19): 12391–6. Bibcode:2002PNAS...9912391T. doi:10.1073/pnas.182380799. PMC 129455. PMID 12200547.
  94. ^ Ajdić D, et al. (2002). "Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen". Proc. Natl. Acad. Sci. U.S.A. 99 (22): 14434–9. Bibcode:2002PNAS...9914434A. doi:10.1073/pnas.172501299. PMC 137901. PMID 12397186.
  95. ^ Hoskins J, et al. (2001). "Genome of the bacterium Streptococcus pneumoniae strain R6". J Bacteriol. 183 (19): 5709–17. doi:10.1128/JB.183.19.5709-5717.2001. PMC 95463. PMID 11544234.
  96. ^ Tettelin H, et al. (2001). "Complete genome sequence of a virulent isolate of Streptococcus pneumoniae". Science. 293 (5529): 498–506. CiteSeerX 10.1.1.318.395. doi:10.1126/science.1061217. PMID 11463916. S2CID 714948.
  97. ^ a b c d Beres SB, et al. (2006). "Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus". Proc. Natl. Acad. Sci. U.S.A. 103 (18): 7059–64. Bibcode:2006PNAS..103.7059B. doi:10.1073/pnas.0510279103. PMC 1459018. PMID 16636287.
  98. ^ Banks DJ, et al. (2004). "Progress toward characterization of the group A Streptococcus metagenome: complete genome sequence of a macrolide-resistant serotype M6 strain". J Infect Dis. 190 (4): 727–38. doi:10.1086/422697. PMID 15272401.
  99. ^ Beres SB, et al. (2002). "Genome sequence of a serotype M3 strain of group A Streptococcus: phage-encoded toxins, the high-virulence phenotype, and clone emergence". Proc. Natl. Acad. Sci. U.S.A. 99 (15): 10078–83. Bibcode:2002PNAS...9910078B. doi:10.1073/pnas.152298499. PMC 126627. PMID 12122206.
  100. ^ Sumby P, et al. (2005). "Evolutionary origin and emergence of a highly successful clone of serotype M1 group a Streptococcus involved multiple horizontal gene transfer events". J Infect Dis. 192 (5): 771–82. doi:10.1086/432514. PMID 16088826.
  101. ^ Green NM, et al. (2005). "Genome sequence of a serotype M28 strain of group A Streptococcus: potential new insights into puerperal sepsis and bacterial disease specificity". J Infect Dis. 192 (5): 760–70. doi:10.1086/430618. PMID 16088825.
  102. ^ Smoot JC, et al. (2002). "Genome sequence and comparative microarray analysis of serotype M18 group A Streptococcus strains associated with acute rheumatic fever outbreaks". Proc. Natl. Acad. Sci. U.S.A. 99 (7): 4668–73. Bibcode:2002PNAS...99.4668S. doi:10.1073/pnas.062526099. PMC 123705. PMID 11917108.
  103. ^ Ferretti JJ, et al. (2001). "Complete genome sequence of an M1 strain of Streptococcus pyogenes". Proc. Natl. Acad. Sci. U.S.A. 98 (8): 4658–63. Bibcode:2001PNAS...98.4658F. doi:10.1073/pnas.071559398. PMC 31890. PMID 11296296.
  104. ^ Nakagawa I, et al. (2003). "Genome sequence of an M3 strain of Streptococcus pyogenes reveals a large-scale genomic rearrangement in invasive strains and new insights into phage evolution". Genome Res. 13 (6A): 1042–55. doi:10.1101/gr.1096703. PMC 403657. PMID 12799345.
  105. ^ a b Bolotin A, et al. (2004). "Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus". Nat Biotechnol. 22 (12): 1554–8. doi:10.1038/nbt1034. PMC 7416660. PMID 15543133.
  106. ^ Kapatral V, et al. (2002). "Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586". J Bacteriol. 184 (7): 2005–18. doi:10.1128/JB.184.7.2005-2018.2002. PMC 134920. PMID 11889109.
  107. ^ Goodner B, et al. (2001). "Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58". Science. 294 (5550): 2323–8. Bibcode:2001Sci...294.2323G. doi:10.1126/science.1066803. PMID 11743194. S2CID 86255214.
  108. ^ Brayton KA, et al. (2005). "Complete genome sequencing of Anaplasma marginale reveals that the surface is skewed to two superfamilies of outer membrane proteins". Proc. Natl. Acad. Sci. U.S.A. 102 (3): 844–9. Bibcode:2005PNAS..102..844B. doi:10.1073/pnas.0406656102. PMC 545514. PMID 15618402.
  109. ^ a b c Dunning Hotopp JC, et al. (2006). "Comparative genomics of emerging human ehrlichiosis agents". PLOS Genet. 2 (2): e21. doi:10.1371/journal.pgen.0020021. PMC 1366493. PMID 16482227.
  110. ^ a b Alsmark CM, et al. (2004). "The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae". Proc. Natl. Acad. Sci. U.S.A. 101 (26): 9716–21. Bibcode:2004PNAS..101.9716A. doi:10.1073/pnas.0305659101. PMC 470741. PMID 15210978.
  111. ^ Kaneko T, et al. (2002). "Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110". DNA Res. 9 (6): 189–97. doi:10.1093/dnares/9.6.189. PMID 12597275.
  112. ^ a b Chain PS, et al. (2005). "Whole-genome analyses of speciation events in pathogenic Brucellae". Infection and Immunity. 73 (12): 8353–61. doi:10.1128/IAI.73.12.8353-8361.2005. PMC 1307078. PMID 16299333.
  113. ^ a b Halling SM, et al. (2005). "Completion of the genome sequence of Brucella abortus and comparison to the highly similar genomes of Brucella melitensis and Brucella suis". J Bacteriol. 187 (8): 2715–26. doi:10.1128/JB.187.8.2715-2726.2005. PMC 1070361. PMID 15805518.
  114. ^ a b DelVecchio VG, et al. (2002). "The genome sequence of the facultative intracellular pathogen Brucella melitensis". Proc. Natl. Acad. Sci. U.S.A. 99 (1): 443–8. Bibcode:2002PNAS...99..443D. doi:10.1073/pnas.221575398. PMC 117579. PMID 11756688.
  115. ^ a b Paulsen IT, et al. (2002). "The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts". Proc. Natl. Acad. Sci. U.S.A. 99 (20): 13148–53. Bibcode:2002PNAS...9913148P. doi:10.1073/pnas.192319099. PMC 130601. PMID 12271122.
  116. ^ Nierman WC, et al. (2001). "Complete genome sequence of Caulobacter crescentus". Proc. Natl. Acad. Sci. U.S.A. 98 (7): 4136–41. Bibcode:2001PNAS...98.4136N. doi:10.1073/pnas.061029298. PMC 31192. PMID 11259647.
  117. ^ Collins NE, et al. (2005). "The genome of the heartwater agent Ehrlichia ruminantium contains multiple tandem repeats of actively variable copy number". Proc. Natl. Acad. Sci. U.S.A. 102 (3): 838–43. Bibcode:2005PNAS..102..838C. doi:10.1073/pnas.0406633102. PMC 545511. PMID 15637156.
  118. ^ Prust C, et al. (2005). "Complete genome sequence of the acetic acid bacterium Gluconobacter oxydans". Nat Biotechnol. 23 (2): 195–200. doi:10.1038/nbt1062. PMID 15665824.
  119. ^ Matsunaga T, et al. (2005). "Complete genome sequence of the facultative anaerobic magnetotactic bacterium Magnetospirillum sp. strain AMB-1". DNA Res. 12 (3): 157–66. doi:10.1093/dnares/dsi002. PMID 16303747.
  120. ^ Kaneko T, et al. (2000). "Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti". DNA Res. 7 (6): 331–8. doi:10.1093/dnares/7.6.331. PMID 11214968.
  121. ^ Giovannoni SJ, et al. (2005). "Genome streamlining in a cosmopolitan oceanic bacterium". Science. 309 (5738): 1242–5. Bibcode:2005Sci...309.1242G. doi:10.1126/science.1114057. PMID 16109880. S2CID 16221415.
  122. ^ González V, et al. (2006). "The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons". Proc. Natl. Acad. Sci. U.S.A. 103 (10): 3834–9. Bibcode:2006PNAS..103.3834G. doi:10.1073/pnas.0508502103. PMC 1383491. PMID 16505379.
  123. ^ Larimer FW, et al. (2004). "Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris". Nat Biotechnol. 22 (1): 55–61. doi:10.1038/nbt923. PMID 14704707.
  124. ^ Ogata H, et al. (2000). "Selfish DNA in protein-coding genes of Rickettsia". Science. 290 (5490): 347–50. Bibcode:2000Sci...290..347O. doi:10.1126/science.290.5490.347. PMID 11030655.
  125. ^ Ogata H, et al. (2005). "The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite". PLOS Biol. 3 (8): e248. doi:10.1371/journal.pbio.0030248. PMC 1166351. PMID 15984913.
  126. ^ Andersson SG, et al. (1998). "The genome sequence of Rickettsia prowazekii and the origin of mitochondria". Nature. 396 (6707): 133–40. Bibcode:1998Natur.396..133A. doi:10.1038/24094. PMID 9823893.
  127. ^ McLeod MP, et al. (2004). "Complete genome sequence of Rickettsia typhi and comparison with sequences of other rickettsiae". J Bacteriol. 186 (17): 5842–55. doi:10.1128/JB.186.17.5842-5855.2004. PMC 516817. PMID 15317790.
  128. ^ Moran MA, et al. (2004). "Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment". Nature. 432 (7019): 910–3. Bibcode:2004Natur.432..910M. doi:10.1038/nature03170. PMID 15602564.
  129. ^ "Home - Sinorhizobium medicae WSM419".
  130. ^ Capela D, et al. (2001). "Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021". Proc. Natl. Acad. Sci. U.S.A. 98 (17): 9877–82. Bibcode:2001PNAS...98.9877C. doi:10.1073/pnas.161294398. PMC 55546. PMID 11481430.
  131. ^ Foster J, et al. (2005). "The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode". PLOS Biol. 3 (4): e121. doi:10.1371/journal.pbio.0030121. PMC 1069646. PMID 15780005.
  132. ^ Wu M, et al. (2004). "Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements". PLOS Biol. 2 (3): E69. doi:10.1371/journal.pbio.0020069. PMC 368164. PMID 15024419.
  133. ^ Seo JS, et al. (2005). "The genome sequence of the ethanologenic bacterium Zymomonas mobilis ZM4". Nat Biotechnol. 23 (1): 63–8. doi:10.1038/nbt1045. PMC 6870993. PMID 15592456.
  134. ^ Rabus R, et al. (2002). "Genes involved in the anaerobic degradation of ethylbenzene in a denitrifying bacterium, strain EbN1". Arch Microbiol. 178 (6): 506–16. Bibcode:2002ArMic.178..506R. doi:10.1007/s00203-002-0487-2. PMID 12420173. S2CID 34316083.
  135. ^ Nierman WC, et al. (2004). "Structural flexibility in the Burkholderia mallei genome". Proc. Natl. Acad. Sci. U.S.A. 101 (39): 14246–51. Bibcode:2004PNAS..10114246N. doi:10.1073/pnas.0403306101. PMC 521142. PMID 15377793.
  136. ^ a b BMC Genomics. 2005 Dec 7, Dec
  137. ^ Brazilian National Genome Project Consortium. (2003). "The complete genome sequence of Chromobacterium violaceum reveals remarkable and exploitable bacterial adaptability". Proc. Natl. Acad. Sci. U.S.A. 100 (20): 11660–5. Bibcode:2003PNAS..10011660.. doi:10.1073/pnas.1832124100. PMC 208814. PMID 14500782.
  138. ^ Parkhill J, et al. (2000). "Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491". Nature. 404 (6777): 502–6. Bibcode:2000Natur.404..502P. doi:10.1038/35006655. PMID 10761919. S2CID 4430718.
  139. ^ Tettelin H, et al. (2000). "Complete genome sequence of Neisseria meningitidis serogroup B strain MC58". Science. 287 (5459): 1809–15. Bibcode:2000Sci...287.1809.. doi:10.1126/science.287.5459.1809. PMID 10710307.
  140. ^ Chain P, et al. (2003). "Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea". J Bacteriol. 185 (9): 2759–73. doi:10.1128/JB.185.9.2759-2773.2003. PMC 154410. PMID 12700255.
  141. ^ a b Salanoubat M, et al. (2002). "Genome sequence of the plant pathogen Ralstonia solanacearum". Nature. 415 (6871): 497–502. doi:10.1038/415497a. PMID 11823852.
  142. ^ Barbe V, et al. (2004). "Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium". Nucleic Acids Res. 32 (19): 5766–79. doi:10.1093/nar/gkh910. PMC 528795. PMID 15514110.
  143. ^ Gil R, et al. (2003). "The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes". Proc. Natl. Acad. Sci. U.S.A. 100 (16): 9388–93. Bibcode:2003PNAS..100.9388G. doi:10.1073/pnas.1533499100. PMC 170928. PMID 12886019.
  144. ^ Degnan PH, et al. (2005). "Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects". Genome Res. 15 (8): 1023–33. doi:10.1101/gr.3771305. PMC 1182215. PMID 16077009.
  145. ^ Shigenobu S, et al. (2000). "Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS". Nature. 407 (6800): 81–6. Bibcode:2000Natur.407...81S. doi:10.1038/35024074. PMID 10993077.
  146. ^ van Ham RC, et al. (2003). "Reductive genome evolution in Buchnera aphidicola". Proc. Natl. Acad. Sci. U.S.A. 100 (2): 581–6. Bibcode:2003PNAS..100..581V. doi:10.1073/pnas.0235981100. PMC 141039. PMID 12522265.
  147. ^ Tamas I, et al. (2002). "50 million years of genomic stasis in endosymbiotic bacteria". Science. 296 (5577): 2376–9. Bibcode:2002Sci...296.2376T. doi:10.1126/science.1071278. PMID 12089438. S2CID 19226473.
  148. ^ Nakabachi A, et al. (2006). "The 160-kilobase genome of the bacterial endosymbiont Carsonella". Science. 314 (5797): 267. doi:10.1126/science.1134196. PMID 17038615. S2CID 44570539.
  149. ^ Seshadri R, et al. (2003). "Complete genome sequence of the Q-fever pathogen Coxiella burnetii". Proc. Natl. Acad. Sci. U.S.A. 100 (9): 5455–60. Bibcode:2003PNAS..100.5455S. doi:10.1073/pnas.0931379100. PMC 154366. PMID 12704232.
  150. ^ Welch RA, et al. (2002). "Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 17020–4. Bibcode:2002PNAS...9917020W. doi:10.1073/pnas.252529799. PMC 139262. PMID 12471157.{{cite journal}}: CS1 maint: numeric names: authors list (link)
  151. ^ Blattner FR, et al. (1997). "The complete genome sequence of Escherichia coli K-12". Science. 277 (5331): 1453–74. doi: