| Line | Route | Frequency | Notes |
| 16 | Bordeaux-Saint-Jean – Cenon – Bassens† – La Gorp† – Saint-Loubès† – Saint-Sulpice-Izon† – Vayres† – Libourne – Saint-Denis-de-Pile† – Coutras – Les Églisottes – Saint-Aigulin-La-Roche-Chalais – Chalais – Montmoreau – Angoulême | 2× per day Bordeaux–Angoulême, 1× per day Coutras–Angoulême, several additional services between Bordeaux and Coutras | |
| 17 | Bordeaux-Saint-Jean ... Saintes | | |
| 24 | Bordeaux-Saint-Jean – Cenon – Libourne – Coutras – Saint-Médard-de-Guizières† – Saint-Seurin-sur-l'Isle† – Montpon-Ménestérol – Mussidan – Douzillac† – Neuvic† – Saint-Léon-sur-l'Isle† – Saint-Astier – Razac† – La Cave† – Marsac† – Périgueux | 13× per day, some trains continue to Limoges (see TER Limousin line 4) or Brive-la-Gaillarde (see line 25) | |
| 25 | Périgueux – Niversac† – Saint-Pierre-de-Chignac† – Milhac-d'Auberoche† – Limeyrat† – Thenon – La Bachellerie† – Condat-Le Lardin – Terrasson – La Rivière-de-Mansac† – Larche† – Brive-la-Gaillarde | 12× per day, some trains continue to Bordeaux (see line 24) | |
| 26 | Bordeaux-Saint-Jean – Cenon – Libourne – Saint-Emilion – Castillon – Lamothe-Montravel† – Velines† – Saint-Antoine-de-Breuilh† – Sainte-Foy-la-Grande – Gardonne† – Lamonzie-Saint-Martin† – Bergerac – Couze† – Lalinde – Mauzac† – Trémolat – Le Buisson – Siorac-en-Périgord† – Saint-Cyprien – Sarlat-la-Canéda | 6× per day Bordeaux–Sarlat-la-Canéda, 5× per day Bordeaux–Bergerac, 1× per day Libourne–Bergerac | |
| 32 | Bordeaux-Saint-Jean – Biganos-Facture -Arcachon | | |
| 33 | Bordeaux-Saint-Jean ... Pauillac ... Le Verdon-sur-Mer | | |
| 40 | Bordeaux-Saint-Jean ... Mont-de-Marsan | | |
| 47 | Bordeaux-Saint-Jean – Bègles† – Villenave-d'Ornon† – Cadaujac† – Saint-Médard-d'Eyrans† – Beautiran† – Portets† – Arbanats† – Podensac† – Cérons† – Barsac† – Preignac† – Langon – Saint-Macaire† – Saint-Pierre-d'Aurillac† – Caudrot† – Gironde† – La Réole – Lamothe-Landerron† – Sainte-Bazeille† – Marmande – Tonneins – Aiguillon – Port-Sainte-Marie – Agen | 10x per day Bordeaux–Agen, 2× per day Bordeaux–Marmande, 7× per day Bordeaux–Langon, 1× per day Marmande–Agen | |
| 48 | Périgueux – Périgueux-Saint-Georges† – Niversac – Les Versannes† – Mauzens-Miremont† – Les Eyzies – Le Bugue – Le Buisson – Siorac-en-Périgord – Belvès – Villefranche-du-Périgord – Sauveterre-la-Lémance† – Monsempron-Libos – Trentels-Ladignac† – Penne-d'Agenais – Laroque-Timbaut† – Pont-du-Casse† – Agen | 4× per day Périgueux–Agen, 2× per day Périgueux–Le Buisson, 4× per day Monsempron-Libos–Agen | |
| 61 | Bordeaux-Saint-Jean – Pessac – Biganos-Facture – Ychoux† – Labouheyre† – Morcenx – Dax – Saubusse-les-Bains† – Saint-Geours-de-Maremne† – Saint-Vincent-de-Tyrosse – Bénesse-Maremne† – Labenne† – Ondres† – Boucau† – Bayonne – Biarritz – Guéthary† – Saint-Jean-de-Luz-Ciboure – Les Deux-Jumeaux† – Hendaye | 5× per day Bordeaux–Hendaye, 9× per day Dax–Hendaye, 1× per day Bayonne–Hendaye | |
| 62 | Bayonne – Villefranque† – Ustaritz – Jatxou† – Halsou-Larressore† – Cambo-les-Bains – Itxassou† – Louhossoa† – Bidarray-Pont-Noblia – Ossès-Saint-Martin-d'Arrossa – Saint-Jean-Pied-de-Port | 3× per day | |
| 63 | Pau – La Croix du Prince – Gan – Buzy – Ogeu-les-Bains – Oloron-Sainte-Marie | 8× per day | |
| 64 | Bordeaux-Saint-Jean – Pessac – Biganos-Facture – Ychoux† – Labouheyre† – Morcenx – Dax – Puyoô – Orthez – Artix – Pau | 4× per day Bordeaux–Pau, 3× per day Bordeaux–Dax, 4× per day Dax–Pau | |
| 65 | Bayonne – Urt† – Peyrehorade – Puyoô – Orthez – Artix† – Pau – Assat† – Coarraze-Nay – Montaut-Bétharram† – Saint-Pé-de-Bigorre† – Lourdes – Ossun† – Tarbes | 2× per day Bayonne–Tarbes, 2× per day Bayonne–Pau | |
| † Not all trains call at this station |
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