/****** Jmol Embedded Script ****

1. Jmol state version 12.0.39 2011-02-04 07:47;

function _setWindowState() {

1. height 759;
2. width 1436;

 stateVersion = 1200039;  background [xffffff];  axis1Color = "[xff0000]";  axis2Color = "[x008000]";  axis3Color = "[x0000ff]";  set ambientPercent 45;  set diffusePercent 84;  set specular true;  set specularPercent 22;  set specularPower 40;  set specularExponent 6;  set zShadePower 1;  statusReporting  = true; 

}

function _setFileState() {

 set allowEmbeddedScripts false;  set appendNew true;  set appletProxy "";  set applySymmetryToBonds false;  set autoBond true;  set bondRadiusMilliAngstroms 150;  set bondTolerance 0.45;  set defaultLattice {0.0 0.0 0.0};  set defaultLoadFilter "";  set defaultLoadScript "";  set defaultVDW Auto;  set forceAutoBond false;  #set defaultDirectory "C:/Windows/system32";  #set loadFormat "-{R|http://www.rcsb.org/pdb/files/%FILE.pdb.gz%22}-;  #set smilesUrlFormat "-{R|http://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf&get3d=True%22}-;  #set edsUrlFormat "-{R|http://eds.bmc.uu.se/eds/dfs/%LC13/%LCFILE/%LCFILE.omap%22}-;  #set edsUrlCutoff "load('-{R|http://eds.bmc.uu.se/eds/dfs/%LC13/%LCFILE/%LCFILE.sfdat').lines.find('MAP_SIGMA').split('}- ')[2]";  set legacyAutoBonding false;  set minBondDistance 0.4;  set minimizationCriterion  0.0010;  set minimizationSteps  100;  set pdbGetHeader false;  set pdbSequential false;  set percentVdwAtom 23;  set smallMoleculeMaxAtoms 40000;  set smartAromatic true;  load auto /*file*/"./3MV5.pdb.gz"; 

}

function _setVariableState() {

  set defaultanglelabel "%VALUE %UNITS";   set defaultcolorscheme "Jmol";   set defaultdistancelabel "%VALUE %UNITS";   set defaultdrawarrowscale 0.5;   set defaultlattice "{0 0 0}";   set defaultloadfilter "";   set defaultloadscript "";   set defaulttorsionlabel "%VALUE %UNITS";   set defaulttranslucent 0.5;   set defaultvdw "Auto";  set allowembeddedscripts true;  set allowrotateselected false;  set appletproxy "";  set applysymmetrytobonds false;  set atompicking true;  set atomtypes "";  set autobond true;  set autofps false;  set axes window;  set axesmode 0;  set axesscale 2.0;  set bondmodeor false;  set bondradiusmilliangstroms 150;  set bondtolerance 0.45;  set cartoonbaseedges false;  set cartoonrockets false;  set chaincasesensitive false;  set dataseparator "~~~";  set defaultstructuredssp true;  set delaymaximumms 0;  set dipolescale 1.0;  set disablepopupmenu false;  set displaycellparameters true;  set dotdensity 3;  set dotscale 1;  set dotsselectedonly false;  set dotsurface true;  set dragselected false;  set drawhover false;  set drawpicking false;  set dsspcalculatehydrogenalways true;  set dynamicmeasurements false;  set ellipsoidarcs false;  set ellipsoidaxes false;  set ellipsoidaxisdiameter 0.02;  set ellipsoidball true;  set ellipsoiddotcount 200;  set ellipsoiddots false;  set ellipsoidfill false;  set forceautobond false;  set fractionalrelative false;  set gestureswipefactor 1.0;  set greyscalerendering false;  set hbondsangleminimum 90.0;  set hbondsbackbone false;  set hbondsdistancemaximum 3.25;  set hbondsrasmol true;  set hbondssolid false;  set helixstep 1;  set helppath "-{R|http://chemapps.stolaf.edu/jmol/docs/index.htm%22}-;  set hermitelevel 0;  set hidenameinpopup false;  set hidenavigationpoint false;  set highresolution false;  set historylevel 0;  set hoverdelay 0.5;  set imagestate true;  set iskiosk false;  set isosurfacepropertysmoothing true;  set justifymeasurements false;  set loadatomdatatolerance 0.01;  set measureallmodels false;  set measurementlabels true;  set messagestylechime false;  set minbonddistance 0.4;  set minimizationcriterion 0.0010;  set minimizationrefresh true;  set minimizationsilent false;  set minimizationsteps 100;  set monitorenergy false;  set multiplebondradiusfactor 0.0;  set multiplebondspacing -1.0;  set navigatesurface false;  set navigationperiodic false;  set navigationspeed 5.0;  set pdbgetheader false;  set pdbsequential false;  set percentvdwatom 23;  set pickingspinrate 10;  set picklabel "";  set pointgroupdistancetolerance 0.2;  set pointgrouplineartolerance 8.0;  set propertyatomnumbercolumncount 0;  set propertyatomnumberfield 0;  set propertycolorscheme "roygb";  set propertydatacolumncount 0;  set propertydatafield 0;  set quaternionframe "p";  set rangeselected false;  set ribbonaspectratio 16;  set ribbonborder false;  set rocketbarrels false;  set saveproteinstructurestate true;  set selectallmodels true;  set selecthetero true;  set selecthydrogen true;  set sheetsmoothing 1.0;  set showhiddenselectionhalos false;  set showhydrogens true;  set showkeystrokes true;  set showmeasurements true;  set showmultiplebonds true;  set shownavigationpointalways false;  set slabbyatom false;  set slabbymolecule false;  set smallmoleculemaxatoms 40000;  set smartaromatic true;  set solventprobe false;  set solventproberadius 1.2;  set ssbondsbackbone false;  set stereodegrees -5;  set strandcountformeshribbon 7;  set strandcountforstrands 5;  set strutdefaultradius 0.3;  set strutlengthmaximum 7.0;  set strutsmultiple false;  set strutspacing 6;  set testflag1 false;  set testflag2 false;  set testflag3 false;  set testflag4 false;  set tracealpha true;  set usearcball false;  set useminimizationthread true;  set usenumberlocalization true;  set vectorscale 1.0;  set vibrationscale 0.5;  set wireframerotation false;  set zoomlarge true; 

1. label defaults;

 select none;  color label none;  background label none;  set labelOffset 4 4;  set labelAlignment left;  set labelPointer off;  font label 13.0 SansSerif Plain; 

}

function _setModelState() {

 select ({0:2675});  color atoms opaque structure;  Spacefill 0.0;  select BONDS ({0:12 31:2758});  wireframe 0.0; 

 measures delete;  select *; set measures nanometers;  font measures 15.0 SansSerif Plain; 

 select ({0:2675});  Cartoon on; 

 boundBox off;  font boundBox 14.0 SansSerif Plain;  boundBox off; 

 unitcell off;  font unitcell 14.0 SansSerif Plain;  unitcell off; 

 hover "%U"; 

 frank on;  font frank 16.0 SansSerif Bold;  select *; 

}

function _setPerspectiveState() {

 set perspectiveModel 11;  set scaleAngstromsPerInch 0.0;  set perspectiveDepth true;  set visualRange 5.0;  set cameraDepth 3.0;  boundbox corners {-23.552 -24.411999 -6.558998} {24.613 23.784 56.082} # volume = 145412.33;  center {0.5305004 -0.31400013 24.761501};  moveto -1.0 {0 0 1 0} 100.0 0.0 0.07 {0.5305004 -0.31400013 24.761501} 35.44463 {0.0 0.0 0.0} 0.0 0.0 0.0;  save orientation "default";  moveto 0.0 { 399 821 408 174.26} 71.42 0.0 0.0 {0.5305004 -0.31400013 24.761501} 35.44463 {0.0 0.0 0.0} -10.071647 31.629326 0.0;;  slab 100;depth 0;  set spinX 0; set spinY 30; set spinZ 0; set spinFps 30;  set navX 0; set navY 0; set navZ 0; set navFps 10; 

}

function _setSelectionState() {

 hide ({2693:2748});  select ({0:2692});  set hideNotSelected true; 

}

function _setState() {

 initialize;  set refreshing false;  _setWindowState;  _setFileState;  _setVariableState;  _setModelState;  _setPerspectiveState;  _setSelectionState;  set refreshing true;  set antialiasDisplay false;  set antialiasTranslucent true;  set antialiasImages true; 

}

_setState;

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