List of sequenced animal genomes

This list of sequenced animal genomes contains animal species for which complete genome sequences have been assembled, annotated and published. Substantially complete draft genomes are included, but not partial genome sequences or organelle-only sequences.

Porifera

[edit]

Ctenophora

[edit]

Placozoa

[edit]

Cnidaria

[edit]

Deuterostomia

[edit]

Hemichordates

[edit]

Echinoderms

[edit]

Tunicates

[edit]

Cephalochordates

[edit]

Cyclostomes

[edit]

Cartilaginous fish

[edit]

Bony fish

[edit]

Amphibians

[edit]

Frogs (Anura)

[edit]

Salamanders (Urodela)

[edit]

Reptiles

[edit]

Birds (Aves)

[edit]
Ratites (Palaeognathae)
[edit]
Fowl (Galloanserae)
[edit]
Neoaves
[edit]

Crocodilia

[edit]

Turtles (Testudines)

[edit]
Crytodira (Hidden-Neck Turtles)
[edit]
Trionychia (Softshell Turtles)
[edit]
Testudinoidea
[edit]
Chelonioidea (Sea Turtles)
[edit]

Rhynchocephalia

[edit]

Squamata

[edit]

Mammals

[edit]

Monotremes

[edit]

Marsupials

[edit]

Placentals

[edit]
Afrotheria
[edit]
Euarchontoglires
[edit]
Laurasiatheria
[edit]

Protostomia

[edit]

Insects

[edit]

Crustaceans

[edit]

Chelicerates

[edit]

Order Xiphosura:

Order Ixodida:

Order Mesostigmata:

Order Trombidiformes:

Order Scorpiones:

Order Araneae:

Myriapods

[edit]

Onychophora

[edit]

Tardigrades

[edit]

Molluscs

[edit]

Platyhelminthes

[edit]

Nematodes

[edit]

Annelids

[edit]

Bryozoa

[edit]

Brachiopoda

[edit]

Rotifera

[edit]

See also

[edit]

References

[edit]
  1. ^ Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier ME, Abhisex, et al. (August 2010). "The Amphimedon queenslandica genome and the evolution of animal complexity". Nature. 466 (7307): 720–6. Bibcode:2010Natur.466..720S. doi:10.1038/nature09201. PMC 3130542. PMID 20686567.
  2. ^ a b Ryu T, Seridi L, Moitinho-Silva L, Oates M, Liew YJ, Mavromatis C, et al. (February 2016). "Hologenome analysis of two marine sponges with different microbiomes". BMC Genomics. 17 (1): 158. doi:10.1186/s12864-016-2501-0. PMC 4772301. PMID 26926518.
  3. ^ Kenny N, Francis, W, et al. (July 2020). "Tracing animal genomic evolution with the chromosomal-level assembly of the freshwater sponge Ephydatia muelleri". Nature Communications. 11 (1): 720–6. Bibcode:2020NatCo..11.3676K. doi:10.1038/s41467-020-17397-w. PMC 7385117. PMID 32719321.
  4. ^ National Human Genome Research Institute (2012). "NHGRI Mnemiopsis Genome Project". Retrieved 2013-02-05.
  5. ^ Ryan JF, Pang K, Schnitzler CE, Nguyen AD, Moreland RT, Simmons DK, et al. (December 2013). "The genome of the ctenophore Mnemiopsis leidyi and its implications for cell type evolution". Science. 342 (6164): 1242592. doi:10.1126/science.1242592. PMC 3920664. PMID 24337300.
  6. ^ Schultz DT, Francis WR, McBroome JD, Christianson LM, Haddock SH, Green RE (October 2021). "A chromosome-scale genome assembly and karyotype of the ctenophore Hormiphora californensis". G3: Genes, Genomes, Genetics. 11 (11). doi:10.1093/g3journal/jkab302. PMC 8527503. PMID 34545398.
  7. ^ Moroz LL, Kocot KM, Citarella MR, Dosung S, Norekian TP, Povolotskaya IS, et al. (June 2014). "The ctenophore genome and the evolutionary origins of neural systems". Nature. 510 (7503): 109–14. Bibcode:2014Natur.510..109M. doi:10.1038/nature13400. PMC 4337882. PMID 24847885.
  8. ^ Johnson, Shannon B.; Winnikoff, Jacob R.; Schultz, Darrin T.; Christianson, Lynne M.; Patry, Wyatt L.; Mills, Claudia E.; Haddock, Steven H. D. (2022). "Speciation of pelagic zooplankton: Invisible boundaries can drive isolation of oceanic ctenophores". Frontiers in Genetics. 13: 970314. doi:10.3389/fgene.2022.970314. ISSN 1664-8021. PMC 9585324. PMID 36276958.
  9. ^ Srivastava M, Begovic E, Chapman J, Putnam NH, Hellsten U, Kawashima T, et al. (August 2008). "The Trichoplax genome and the nature of placozoans". Nature. 454 (7207): 955–60. Bibcode:2008Natur.454..955S. doi:10.1038/nature07191. PMID 18719581. S2CID 4415492.
  10. ^ Eitel M, Francis WR, Varoqueaux F, Daraspe J, Osigus HJ, Krebs S, et al. (July 2018). "Comparative genomics and the nature of placozoan species". PLOS Biology. 16 (7): e2005359. doi:10.1371/journal.pbio.2005359. PMC 6067683. PMID 30063702.
  11. ^ Chapman JA, Kirkness EF, Simakov O, Hampson SE, Mitros T, Weinmaier T, et al. (March 2010). "The dynamic genome of Hydra". Nature. 464 (7288): 592–6. Bibcode:2010Natur.464..592C. doi:10.1038/nature08830. PMC 4479502. PMID 20228792.
  12. ^ Putnam NH, Srivastava M, Hellsten U, Dirks B, Chapman J, Salamov A, et al. (July 2007). "Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization". Science. 317 (5834): 86–94. Bibcode:2007Sci...317...86P. doi:10.1126/science.1139158. PMID 17615350. S2CID 9868191.
  13. ^ Baumgarten S, Simakov O, Esherick LY, Liew YJ, Lehnert EM, Michell CT, et al. (September 2015). "The genome of Aiptasia, a sea anemone model for coral symbiosis". Proceedings of the National Academy of Sciences of the United States of America. 112 (38): 11893–8. Bibcode:2015PNAS..11211893B. doi:10.1073/pnas.1513318112. PMC 4586855. PMID 26324906.
  14. ^ Jiang J (2017). "Renilla muelleri genome". reefgenomics.
  15. ^ Jiang JB, Quattrini AM, Francis WR, Ryan JF, Rodríguez E, McFadden CS (April 2019). "A hybrid de novo assembly of the sea pansy (Renilla muelleri) genome". GigaScience. 8 (4). doi:10.1093/gigascience/giz026. PMC 6446218. PMID 30942866.
  16. ^ Voolstra CR, Li Y, Liew YJ, Baumgarten S, Zoccola D, Flot JF, et al. (December 2017). "Comparative analysis of the genomes of Stylophora pistillata and Acropora digitifera provides evidence for extensive differences between species of corals". Scientific Reports. 7 (1): 17583. Bibcode:2017NatSR...717583V. doi:10.1038/s41598-017-17484-x. PMC 5730576. PMID 29242500.
  17. ^ Gold DA, Katsuki T, Li Y, Yan X, Regulski M, Ibberson D, et al. (January 2019). "The genome of the jellyfish Aurelia and the evolution of animal complexity" (PDF). Nature Ecology & Evolution. 3 (1): 96–104. doi:10.1038/s41559-018-0719-8. PMID 30510179. S2CID 54437176.
  18. ^ Leclère L, Horin C, Chevalier S, Lapébie P, Dru P, Peron S, et al. (May 2019). "The genome of the jellyfish Clytia hemisphaerica and the evolution of the cnidarian life-cycle". Nature Ecology & Evolution. 3 (5): 801–810. Bibcode:2019NatEE...3..801L. doi:10.1038/s41559-019-0833-2. PMID 30858591. S2CID 73728941.
  19. ^ Guo Q, Atkinson SD, Xiao B, Zhai Y, Bartholomew JL, Gu Z (February 2022). "A myxozoan genome reveals mosaic evolution in a parasitic cnidarian". BMC Biology. 20 (1): 51. doi:10.1186/s12915-022-01249-8. PMC 8855578. PMID 35177085.
  20. ^ Kim HM, Weber JA, Lee N, Park SG, Cho YS, Bhak Y, et al. (March 2019). "The genome of the giant Nomura's jellyfish sheds light on the early evolution of active predation". BMC Biology. 17 (1): 28. doi:10.1186/s12915-019-0643-7. PMC 6441219. PMID 30925871.
  21. ^ Li Y, Gao L, Pan Y, Tian M, Li Y, He C, et al. (April 2020). "Chromosome-level reference genome of the jellyfish Rhopilema esculentum". GigaScience. 9 (4). doi:10.1093/gigascience/giaa036. PMC 7172023. PMID 32315029.
  22. ^ a b c Ohdera A, Ames CL, Dikow RB, Kayal E, Chiodin M, Busby B, et al. (July 2019). "Box, stalked, and upside-down? Draft genomes from diverse jellyfish (Cnidaria, Acraspeda) lineages: Alatina alata (Cubozoa), Calvadosia cruxmelitensis (Staurozoa), and Cassiopea xamachana (Scyphozoa)". GigaScience. 8 (7). doi:10.1093/gigascience/giz069. PMC 6599738. PMID 31257419.
  23. ^ Jeon Y, Park SG, Lee N, Weber JA, Kim HS, Hwang SJ, et al. (March 2019). "The Draft Genome of an Octocoral, Dendronephthya gigantea". Genome Biology and Evolution. 11 (3): 949–953. doi:10.1093/gbe/evz043. PMC 6447388. PMID 30825304.
  24. ^ a b c d e f g h i j k l m n o p q r Shinzato C, Khalturin K, Inoue J, Zayasu Y, Kanda M, Kawamitsu M, et al. (January 2021). "Eighteen Coral Genomes Reveal the Evolutionary Origin of Acropora Strategies to Accommodate Environmental Changes". Molecular Biology and Evolution. 38 (1): 16–30. doi:10.1093/molbev/msaa216. PMC 7783167. PMID 32877528.
  25. ^ Shinzato C, Shoguchi E, Kawashima T, Hamada M, Hisata K, Tanaka M, et al. (July 2011). "Using the Acropora digitifera genome to understand coral responses to environmental change". Nature. 476 (7360): 320–3. Bibcode:2011Natur.476..320S. doi:10.1038/nature10249. PMID 21785439. S2CID 4364757.
  26. ^ Cooke I, Ying H, Forêt S, Bongaerts P, Strugnell JM, Simakov O, et al. (November 2020). "Genomic signatures in the coral holobiont reveal host adaptations driven by Holocene climate change and reef specific symbionts". Science Advances. 6 (48): eabc6318. Bibcode:2020SciA....6.6318C. doi:10.1126/sciadv.abc6318. PMC 7695477. PMID 33246955. S2CID 227179581.
  27. ^ Herrera S, Cordes EE (2023-03-16). "Genome assembly of the deep-sea coral Lophelia pertusa". GigaByte. 2023: 1–12. doi:10.46471/gigabyte.78. PMC 10022433. PMID 36935863.
  28. ^ a b c d Stephens TG, Lee J, Jeong Y, Yoon HS, Putnam HM, Majerová E, Bhattacharya D (November 2022). "High-quality genome assembles from key Hawaiian coral species". GigaScience. 11. doi:10.1093/gigascience/giac098. PMC 9646523. PMID 36352542.
  29. ^ Stephens TG, Lee J, Jeong Y, Yoon HS, Putnam HM, Majerová E, Bhattacharya D (2022). "GigaDB Dataset – DOI 10.5524/102268 – Chromosome-level genome assembly of Montipora capitata". GigaScience. GigaScience Database. doi:10.5524/102268.
  30. ^ Prada C, Hanna B, Budd AF, Woodley CM, Schmutz J, Grimwood J, et al. (2016). "2016 Empty Niches after Extinctions Increase Population Sizes of Modern Corals". Current Biology. 1 (26): 3190–3194. doi:10.1016/j.cub.2016.09.039. PMID 27866895. S2CID 188206.
  31. ^ Timothy SG, JunMo L, YuJin J, Hwan YS, Hollie PM, Eva M, Debashish B (2022). "GigaDB Dataset – DOI 10.5524/102269 – Genome assembly of a triploid Pocillopora acuta". GigaDB. GigaScience Database. doi:10.5524/102269.
  32. ^ Cunning R, Bay RA, Gillette P, Baker AC, Traylor-Knowles N (October 2018). "Comparative analysis of the Pocillopora damicornis genome highlights role of immune system in coral evolution". Scientific Reports. 8 (1): 16134. Bibcode:2018NatSR...816134C. doi:10.1038/s41598-018-34459-8. PMC 6208414. PMID 30382153.
  33. ^ Stephens TG, Lee J, Jeong Y, Yoon HS, Putnam HM, Majerová E, Bhattacharya D (2022). "GigaDB Dataset – DOI 10.5524/102270 – Genome assembly of Pocillopora meandrina". GigaScience. GigaScience Database. doi:10.5524/102270.
  34. ^ Wong KH, Putnam HM (2022-07-29). "The genome of the mustard hill coral, Porites astreoides". GigaByte. 2022: 1–12. doi:10.46471/gigabyte.65. PMC 9693771. PMID 36824531.
  35. ^ Stephens TG, Lee J, Jeong Y, Yoon HS, Putnam HM, Majerová E, Bhattacharya D (2022). "GigaDB Dataset – DOI 10.5524/102271 – Genome assembly of Porites compressa". GigaScience. GigaScience Database. doi:10.5524/102271.
  36. ^ a b Simakov O, Kawashima T, Marlétaz F, Jenkins J, Koyanagi R, Mitros T, et al. (November 2015). "Hemichordate genomes and deuterostome origins". Nature. 527 (7579): 459–65. Bibcode:2015Natur.527..459S. doi:10.1038/nature16150. PMC 4729200. PMID 26580012.
  37. ^ Baughman KW, McDougall C, Cummins SF, Hall M, Degnan BM, Satoh N, Shoguchi E (December 2014). "Genomic organization of Hox and ParaHox clusters in the echinoderm, Acanthaster planci". Genesis. 52 (12): 952–8. doi:10.1002/dvg.22840. PMID 25394327. S2CID 32809575.
  38. ^ Jo J, Oh J, Lee HG, Hong HH, Lee SG, Cheon S, et al. (January 2017). "Draft genome of the sea cucumber Apostichopus japonicus and genetic polymorphism among color variants". GigaScience. 6 (1): 1–6. doi:10.1093/gigascience/giw006. PMC 5437941. PMID 28369350.
  39. ^ Lee Y, Kim B, Jung J, Koh B, Jhang SY, Ban C, et al. (July 2022). "Chromosome-level genome assembly of Plazaster borealis sheds light on the morphogenesis of multiarmed starfish and its regenerative capacity". GigaScience. 11. doi:10.1093/gigascience/giac063. PMC 9270726. PMID 35809048.
  40. ^ Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, et al. (November 2006). "The genome of the sea urchin Strongylocentrotus purpuratus". Science. 314 (5801): 941–52. Bibcode:2006Sci...314..941S. doi:10.1126/science.1133609. PMC 3159423. PMID 17095691.
  41. ^ Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, et al. (December 2002). "The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins". Science. 298 (5601): 2157–67. Bibcode:2002Sci...298.2157D. doi:10.1126/science.1080049. PMID 12481130. S2CID 15987281.
  42. ^ Small KS, Brudno M, Hill MM, Sidow A (2007). "A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome". Genome Biology. 8 (3): R41. doi:10.1186/gb-2007-8-3-r41. PMC 1868934. PMID 17374142.
  43. ^ Seo HC, Kube M, Edvardsen RB, Jensen MF, Beck A, Spriet E, et al. (December 2001). "Miniature genome in the marine chordate Oikopleura dioica". Science. 294 (5551): 2506. doi:10.1126/science.294.5551.2506. PMID 11752568.
  44. ^ Putnam NH, Butts T, Ferrier DE, Furlong RF, Hellsten U, Kawashima T, et al. (June 2008). "The amphioxus genome and the evolution of the chordate karyotype". Nature. 453 (7198): 1064–71. Bibcode:2008Natur.453.1064P. doi:10.1038/nature06967. PMID 18563158. S2CID 4418548.
  45. ^ Libants S, Carr K, Wu H, Teeter JH, Chung-Davidson YW, Zhang Z, Wilkerson C, Li W (July 2009). "The sea lamprey Petromyzon marinus genome reveals the early origin of several chemosensory receptor families in the vertebrate lineage". BMC Evolutionary Biology. 9 (1): 180. Bibcode:2009BMCEE...9..180L. doi:10.1186/1471-2148-9-180. PMC 2728731. PMID 19646260.
  46. ^ Smith JJ, Kuraku S, Holt C, Sauka-Spengler T, Jiang N, Campbell MS, et al. (April 2013). "Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution". Nature Genetics. 45 (4): 415–21, 421e1-2. doi:10.1038/ng.2568. PMC 3709584. PMID 23435085.
  47. ^ Venkatesh B, Kirkness EF, Loh YH, Halpern AL, Lee AP, Johnson J, et al. (April 2007). "Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome". PLOS Biology. 5 (4): e101. doi:10.1371/journal.pbio.0050101. PMC 1845163. PMID 17407382.
  48. ^ Marra NJ, Stanhope MJ, Jue NK, Wang M, Sun Q, Pavinski Bitar P, et al. (February 2019). "White shark genome reveals ancient elasmobranch adaptations associated with wound healing and the maintenance of genome stability". Proceedings of the National Academy of Sciences of the United States of America. 116 (10): 4446–4455. Bibcode:2019PNAS..116.4446M. doi:10.1073/pnas.1819778116. PMC 6410855. PMID 30782839.
  49. ^ Zhang Y, Gao H, Li H, Guo J, Ouyang B, Wang M, et al. (November 2020). "The White-Spotted Bamboo Shark Genome Reveals Chromosome Rearrangements and Fast-Evolving Immune Genes of Cartilaginous Fish". iScience. 23 (11): 101754. Bibcode:2020iSci...23j1754Z. doi:10.1016/j.isci.2020.101754. PMC 7677710. PMID 33251490.
  50. ^ a b Hara Y, Yamaguchi K, Onimaru K, Kadota M, Koyanagi M, Keeley SD, et al. (November 2018). "Shark genomes provide insights into elasmobranch evolution and the origin of vertebrates". Nature Ecology & Evolution. 2 (11): 1761–1771. Bibcode:2018NatEE...2.1761H. doi:10.1038/s41559-018-0673-5. PMID 30297745. S2CID 52944566.
  51. ^ Read TD, Petit RA, Joseph SJ, Alam MT, Weil MR, Ahmad M, et al. (July 2017). "Draft sequencing and assembly of the genome of the world's largest fish, the whale shark: Rhincodon typus Smith 1828". BMC Genomics. 18 (1): 532. doi:10.1186/s12864-017-3926-9. PMC 5513125. PMID 28709399.
  52. ^ Fan G, Chan J, Ma K, Yang B, Zhang H, Yang X, et al. (November 2018). "Chromosome-level reference genome of the Siamese fighting fish Betta splendens, a model species for the study of aggression". GigaScience. 7 (11). doi:10.1093/gigascience/giy087. PMC 6251983. PMID 30010754.
  53. ^ a b c d e f g h i j Fan G, Song Y, Yang L, Huang X, Zhang S, Zhang M, et al. (August 2020). "Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)". GigaScience. 9 (8). doi:10.1093/gigascience/giaa080. PMC 7433795. PMID 32810278.
  54. ^ Guangyi S, Yue S, Liandong Y, Xiaoyun H, Suyu Z, Mengqi Z, Xianwei Y, Yue C, He Z (2020). "Genomic data of the kissing gourami, Helostoma temminkii". GigaScience Database. doi:10.5524/102190. Retrieved 2020-08-19.
  55. ^ Henkel CV, Burgerhout E, de Wijze DL, Dirks RP, Minegishi Y, Jansen HJ, et al. (2012-02-24). "Primitive duplicate Hox clusters in the European eel's genome". PLOS ONE. 7 (2): e32231. Bibcode:2012PLoSO...732231H. doi:10.1371/journal.pone.0032231. PMC 3286462. PMID 22384188.
  56. ^ Wang H, Wan HT, Wu B, Jian J, Ng AH, Chung CY, et al. (December 2022). "A Chromosome-level assembly of the Japanese eel genome, insights into gene duplication and chromosomal reorganization". GigaScience. 11. doi:10.1093/gigascience/giac120. PMC 9730501. PMID 36480030.
  57. ^ Kasahara M, Naruse K, Sasaki S, Nakatani Y, Qu W, Ahsan B, et al. (June 2007). "The medaka draft genome and insights into vertebrate genome evolution". Nature. 447 (7145): 714–9. Bibcode:2007Natur.447..714K. doi:10.1038/nature05846. PMID 17554307. S2CID 4419559.
  58. ^ Winter S, Prost S, De Raad J, Coimbra R, Wolf M, Nebenfuehr M, et al. (20 October 2020). "Chromosome-level genome assembly of a benthic associated Syngnathiformes species: the common dragonet, Callionymus lyra". Gigabyte. 2020: 1–10. doi:10.46471/gigabyte.6. PMC 9631949. PMID 36824592. S2CID 228961387.
  59. ^ Pickett BD, Glass JR, Johnson TP, Ridge PG, Kauwe JS (2022). "The genome of a giant (trevally): Caranx ignobilis". GigaByte. 2022: 1–16. doi:10.46471/gigabyte.67. PMC 9694125. PMID 36824527.
  60. ^ Pickett BD, Glass JR, Ridge PG, Kauwe JS (September 2021). "De novo genome assembly of the marine teleost, bluefin trevally (Caranx melampygus)". G3: Genes, Genomes, Genetics. 11 (10). doi:10.1093/g3journal/jkab229. PMC 8473972. PMID 34568914.
  61. ^ Catanach A, Ruigrok M, Bowatte D, Davy M, Storey R, Valenza-Troubat N, et al. (November 2021). "The genome of New Zealand trevally (Carangidae: Pseudocaranx georgianus) uncovers a XY sex determination locus". BMC Genomics. 22 (1): 785. doi:10.1186/s12864-021-08102-2. PMC 8561880. PMID 34727894.
  62. ^ Xiao Y, Xiao Z, Ma D, Liu J, Li J (March 2019). "Genome sequence of the barred knifejaw Oplegnathus fasciatus (Temminck & Schlegel, 1844): the first chromosome-level draft genome in the family Oplegnathidae". GigaScience. 8 (3). doi:10.1093/gigascience/giz013. PMC 6423371. PMID 30715332.
  63. ^ McGaugh SE, Gross JB, Aken B, Blin M, Borowsky R, Chalopin D, et al. (October 2014). "The cavefish genome reveals candidate genes for eye loss". Nature Communications. 5 (1): 5307. Bibcode:2014NatCo...5.5307M. doi:10.1038/ncomms6307. PMC 4218959. PMID 25329095.
  64. ^ Warren WC, Boggs TE, Borowsky R, et al. (July 2021). "A chromosome-level genome of Astyanax mexicanus surface fish for comparing population-specific genetic differences contributing to trait evolution". Nature Communications. 12 (1447): 1447. Bibcode:2021NatCo..12.1447W. doi:10.1038/s41467-021-21733-z. PMC 7933363. PMID 33664263.
  65. ^ Hilsdorf AW, Silva MU, Coutinho LL, Montenegro H, Almeida-Val VM, Pinhal D (2021-09-27). "Genome assembly and annotation of the tambaqui (Colossoma macropomum): an emblematic fish of the Amazon River Basin". Gigabyte. 2021: 1–14. doi:10.46471/gigabyte.29. PMC 9650303. PMID 36824330. S2CID 239207530.
  66. ^ Zu, Ru; Zhao, Zi-Xia; Xu, Peng; Sun, Xiao-Wen (24 Oct 2013). "The complete mitochondrial genome of the silvertip tetra, Hasemania nana (Characiformes: Characidae)". Mitochondrial DNA. 26 (6): 889–890. doi:10.3109/19401736.2013.861445. PMID 24409871. S2CID 207747227.
  67. ^ Li, Chunyan; Sun, Zhijing; Fen, Shouming; Jiang, Jufeng; Wu, Huimen; Zhang, Zhenguo; Cai, Chao; Wang, Yongchen (29 Aug 2015). "The complete mitochondrial genome of Hemigrammus bleheri". Mitochondrial DNA Part A. 27 (6): 4449–4450. doi:10.3109/19401736.2015.1089565. PMID 26544159. S2CID 3831171.
  68. ^ Duílio, M. Z. de A. Silva; Ricardo Utsunomia, Francisco J. Ruiz-Romano; Oliveira, Cláudio; Foresti, Fausto (5 Aug 2016). "The complete mitochondrial genome sequence of Astyanax paranae(Teleostei: characiformes)". Mitochondrial DNA Part B. 1 (1): 586–587. doi:10.1080/23802359.2016.1222251. PMC 7800300. PMID 33490410.
  69. ^ a b Conte MA, Joshi R, Moore EC, Nandamuri SP, Gammerdinger WJ, Roberts RB, et al. (April 2019). "Chromosome-scale assemblies reveal the structural evolution of African cichlid genomes". GigaScience. 8 (4). doi:10.1093/gigascience/giz030. PMC 6447674. PMID 30942871.
  70. ^ Í Kongsstovu S, Dahl HA, Gislason H, Í Homrum E, Jacobsen JA, Flicek P, Mikalsen SO (April 2020). "Identification of male heterogametic sex determining regions on the Atlantic herring Clupea harengus genome". Journal of Fish Biology. 97 (1): 190–201. Bibcode:2020JFBio..97..190I. doi:10.1111/jfb.14349. PMC 7115899. PMID 32293027. S2CID 215774454.
  71. ^ Xu G, Bian C, Nie Z, Li J, Wang Y, Xu D, et al. (January 2020). "Genome and population sequencing of a chromosome-level genome assembly of the Chinese tapertail anchovy (Coilia nasus) provides novel insights into migratory adaptation". GigaScience. 9 (1). doi:10.1093/gigascience/giz157. PMC 6939831. PMID 31895412.
  72. ^ Louro B, De Moro G, Garcia C, Cox CJ, Veríssimo A, Sabatino SJ, et al. (May 2019). "A haplotype-resolved draft genome of the European sardine (Sardina pilchardus)". GigaScience. 8 (5). doi:10.1093/gigascience/giz059. PMC 6528745. PMID 31112613.
  73. ^ Amemiya CT, Alföldi J, Lee AP, Fan S, Philippe H, Maccallum I, et al. (April 2013). "The African coelacanth genome provides insights into tetrapod evolution". Nature. 496 (7445): 311–6. Bibcode:2013Natur.496..311A. doi:10.1038/nature12027. PMC 3633110. PMID 23598338.
  74. ^ Jiang W, Qiu Y, Pan X, Zhang Y, Wang X, Lv Y, et al. (2018). "Anabarilius grahami (Regan), and Its Evolutionary and Genetic Applications". Frontiers in Genetics. 9: 614. doi:10.3389/fgene.2018.00614. PMC 6288284. PMID 30564274.
  75. ^ "Ensembl genome browser 59: Danio rerio - Description - Search Ensembl Zebrafish". Ensembl.org. Retrieved 2010-08-27.
  76. ^ Hu S, Niu J, Xie P, Liu C, Karjan A, Wang F, Ma X (2014-01-27). "The complete mitochondrial genome of Leuciscus leuciscus baicalensis (Cypriniformes: Cyprinidae)". Mitochondrial DNA. 26 (5): 751–752. doi:10.3109/19401736.2013.848353. PMID 24460156. S2CID 42320065.
  77. ^ Liu H, Chen C, Gao Z, Min J, Gu Y, Jian J, et al. (July 2017). "The draft genome of blunt snout bream (Megalobrama amblycephala) reveals the development of intermuscular bone and adaptation to herbivorous diet". GigaScience. 6 (7): 1–13. doi:10.1093/gigascience/gix039. PMC 5570040. PMID 28535200.
  78. ^ Hung-du Lin; Feng-Jiau Lin; Tzen-Yuh Chiang & Teh-Wang Lee (2015). "The complete mitochondrial genome sequence of Metzia formosae (Cypriniformes, Cyprinidae)". Mitochondrial DNA. 26 (2): 257–258. doi:10.3109/19401736.2013.823187. PMID 24021002.
  79. ^ Xiao Jiang Chen; Lin Song; You Wen Cao & Quan Wang (2022). "Phylogenetic relationship and characterization of the complete mitochondrial genome sequence of Opsarius caudiocellatus (Cypriniformes: Danionidae: Chedrinae)". Mitochondrial DNA Part B. 7 (12): 2051–2055. doi:10.1080/23802359.2022.2151324. PMC 9744206. PMID 36518734.
  80. ^ Liu HP, Xiao SJ, Wu N, Wang D, Liu YC, Zhou CW, et al. (February 2019). "The sequence and de novo assembly of Oxygymnocypris stewartii genome". Scientific Data. 6: 190009. Bibcode:2019NatSD...690009L. doi:10.1038/sdata.2019.9. PMC 6362891. PMID 30720802.
  81. ^ Fan G, Song Y, Yang L, Huang X, Zhang S, Zhang M, et al. (2020). "Genomic data of Pseudobrama simoni". GigaScience Database. doi:10.5524/102191.
  82. ^ Fan G, Song Y, Yang L, Huang X, Zhang S, Zhang M, et al. (2020). "Genomic data of the rosy bitterling, Rhodeus ocellatus". GigaScience Database. doi:10.5524/102192.
  83. ^ Yuan D, Chen X, Gu H, Zou M, Zou Y, Fang J, et al. (November 2020). "Chromosomal genome of Triplophysa bleekeri provides insights into its evolution and environmental adaptation". GigaScience. 9 (11). doi:10.1093/gigascience/giaa132. PMC 7684707. PMID 33231676.
  84. ^ a b c d Johnson LK, Sahasrabudhe R, Gill JA, Roach JL, Froenicke L, Brown CT, Whitehead A (June 2020). "Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American Fundulus killifish". GigaScience. 9 (6). doi:10.1093/gigascience/giaa067. PMC 7301629. PMID 32556169.
  85. ^ Shao F, Ludwig A, Mao Y, Liu N, Peng Z (August 2020). "Chromosome-level genome assembly of the female western mosquitofish (Gambusia affinis)". GigaScience. 9 (8). doi:10.1093/gigascience/giaa092. PMC 7450667. PMID 32852039.
  86. ^ van Kruistum H, van den Heuvel J, Travis J, Kraaijeveld K, Zwaan BJ, Groenen MA, Megens HJ, Pollux BJ (July 2019). "The genome of the live-bearing fish Heterandria formosa implicates a role of conserved vertebrate genes in the evolution of placental fish". BMC Evolutionary Biology. 19 (1): 156. Bibcode:2019BMCEE..19..156V. doi:10.1186/s12862-019-1484-2. PMC 6660938. PMID 31349784.
  87. ^ Charlesworth D, Graham C, Trivedi U, Gardner J, Bergero R (July 2021). "PromethION sequencing and assembly of the genome of Micropoecilia picta, a fish with a highly Degenerated Y chromosome". Genome Biology and Evolution. 13 (9). evab171. doi:10.1093/gbe/evab171. PMC 8449826. PMID 34297069.
  88. ^ Schartl M, Walter RB, Shen Y, Garcia T, Catchen J, Amores A, et al. (May 2013). "The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits". Nature Genetics. 45 (5): 567–72. doi:10.1038/ng.2604. PMC 3677569. PMID 23542700.
  89. ^ Harel I, Benayoun BA, Machado B, Singh PP, Hu CK, Pech MF, Valenzano DR, Zhang E, Sharp SC, Artandi SE, Brunet A (February 2015). "A platform for rapid exploration of aging and diseases in a naturally short-lived vertebrate". Cell. 160 (5): 1013–1026. doi:10.1016/j.cell.2015.01.038. PMC 4344913. PMID 25684364.
  90. ^ Reichwald K, Petzold A, Koch P, Downie BR, Hartmann N, Pietsch S, et al. (December 2015). "Insights into Sex Chromosome Evolution and Aging from the Genome of a Short-Lived Fish". Cell. 163 (6): 1527–38. doi:10.1016/j.cell.2015.10.071. PMID 26638077. S2CID 16423362.
  91. ^ Valenzano DR, Benayoun BA, Singh PP, Zhang E, Etter PD, Hu CK, Clément-Ziza M, Willemsen D, Cui R, Harel I, Machado BE, Yee MC, Sharp SC, Bustamante CD, Beyer A, Johnson EA, Brunet A (December 2015). "The African Turquoise Killifish Genome Provides Insights into Evolution and Genetic Architecture of Lifespan". Cell. 163 (6): 1539–54. doi:10.1016/j.cell.2015.11.008. PMC 4684691. PMID 26638078.
  92. ^ Wang K, Wang J, Zhu C, Yang L, Ren Y, Ruan J, et al. (February 2021). "African lungfish genome sheds light on the vertebrate water-to-land transition". Cell. 184 (5): 1362–1376.e18. doi:10.1016/j.cell.2021.01.047. PMID 33545087. S2CID 231809825.
  93. ^ Rondeau EB, Minkley DR, Leong JS, Messmer AM, Jantzen JR, von Schalburg KR, et al. (2014). "The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei". PLOS ONE. 9 (7): e102089. Bibcode:2014PLoSO...9j2089R. doi:10.1371/journal.pone.0102089. PMC 4113312. PMID 25069045.
  94. ^ Ma Y, Lou F, Yin X, Cong B, Liu S, Zhao L, Zheng L (July 2022). "Whole-genome survey and phylogenetic analysis of Gadus macrocephalus". Bioscience Reports. 42 (7). doi:10.1042/bsr20221037. PMC 9289796. PMID 35788826.
  95. ^ Star B, Nederbragt AJ, Jentoft S, Grimholt U, Malmstrøm M, Gregers TF, et al. (August 2011). "The genome sequence of Atlantic cod reveals a unique immune system". Nature. 477 (7363): 207–210. Bibcode:2011Natur.477..207S. doi:10.1038/nature10342. PMC 3537168. PMID 21832995.
  96. ^ Jones FC, Grabherr MG, Chan YF, Russell P, Mauceli E, Johnson J, et al. (April 2012). "The genomic basis of adaptive evolution in threespine sticklebacks". Nature. 484 (7392): 55–61. Bibcode:2012Natur.484...55.. doi:10.1038/nature10944. PMC 3322419. PMID 22481358.
  97. ^ Fan G, Song Y, Yang L, Huang X, Zhang S, Zhang M, et al. (2020). "Genomic data of the marble goby, Oxyeleotris marmorata". GigaScience Database. doi:10.5524/102185. Retrieved 2020-08-19.
  98. ^ Yang Y, Yoo JY, Baek SH, Song HY, Jo S, Jung SH, Choi JH (January 2022). "Chromosome-level genome assembly of the shuttles hoppfish, Periophthalmus modestus". GigaScience. 11 (1): giab089. doi:10.1093/gigascience/giab089. PMC 8756193. PMID 35022698.
  99. ^ Gallant JR, Traeger LL, Volkening JD, Moffett H, Chen PH, Novina CD, et al. (June 2014). "Nonhuman genetics. Genomic basis for the convergent evolution of electric organs". Science. 344 (6191): 1522–5. doi:10.1126/science.1254432. PMC 5541775. PMID 24970089.
  100. ^ Wang X, Qu M, Liu Y, Schneider RF, Song Y, Chen Z, et al. (January 2022). "Genomic basis of evolutionary adaptation in a warm-blooded fish". Innovation. 3 (1): 100185. Bibcode:2022Innov...300185W.